Your message dated Sun, 20 Dec 2015 17:00:20 +0000
with message-id <[email protected]>
and subject line Bug#798051: fixed in picard-tools 1.138+dfsg.1-1
has caused the Debian Bug report #798051,
regarding picard-tools: New upstream versions, new upstream repository and new
upstream source code organization
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
798051: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798051
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: picard-tools
Severity: wishlist
Hi,
I've been asked to install in a lab the last version of picard-tools.
Seing it's already packaged in Debian, I was very pleased. But I discovered
that the lattest version are not packaged. Moreover, uscan does not
detect the new versions!
Looking more closely, I see that upstream move from sourceforge to
github and reorganized its sources. See the details here:
http://sourceforge.net/p/samtools/mailman/message/32282849/
Do you plan to try to update picard-tools? (last upstream version is
1.138, currently packaged version is 1.113, the last one on sourceforge)
Do you want I try to help you to package the new version? It will probably
involve creating a new source package (htsjdk) along picard-tools.
Regards,
Vincent
-- System Information:
Debian Release: stretch/sid
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'oldstable-updates'), (500,
'oldoldstable'), (500, 'unstable'), (500, 'testing'), (500, 'stable'), (500,
'oldstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386, armel, mipsel
Kernel: Linux 4.2.0-trunk-amd64 (SMP w/8 CPU cores)
Locale: LANG=fr_FR.utf8, LC_CTYPE=fr_FR.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
--- End Message ---
--- Begin Message ---
Source: picard-tools
Source-Version: 1.138+dfsg.1-1
We believe that the bug you reported is fixed in the latest version of
picard-tools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Vincent Danjean <[email protected]> (supplier of updated picard-tools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 08 Sep 2015 11:15:42 +0200
Source: picard-tools
Binary: picard-tools libpicard-java libpicard-java-doc
Architecture: all source
Version: 1.138+dfsg.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Vincent Danjean <[email protected]>
Closes: 798051
Description:
libpicard-java-doc - Documentation for the java picard library
libpicard-java - Java library to manipulate SAM and BAM files
picard-tools - Command line tools to manipulate SAM and BAM files
Changes:
picard-tools (1.138+dfsg.1-1) unstable; urgency=medium
.
* New release from new upstream location (github). Closes: #798051
* Full reorganization of the packaging
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