Your message dated Mon, 08 Feb 2016 13:21:36 +0000
with message-id <[email protected]>
and subject line Bug#811910: fixed in plink1.9 1.90~b3.31-160203-1
has caused the Debian Bug report #811910,
regarding plink1.9: FTBFS with GCC 6: declared in this scope
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
811910: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811910
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: plink1.9
Version: 1.90~b3.28-151216-1
Severity: important
User: [email protected]
Usertags: ftbfs-gcc-6 gcc-6-not-declared
This package fails to build with GCC 6. GCC 6 has not been released
yet, but it's expected that GCC 6 will become the default compiler for
stretch.
Note that only the first error is reported; there might be more. You
can find a snapshot of GCC 6 in experimental. To build with GCC 6,
you can set CC=gcc-6 CXX=g++-6 explicitly.
You may be able to find out more about this issue at
https://gcc.gnu.org/gcc-6/changes.html
> sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux
...
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> g++ -Wall -g -O2 -fstack-protector-strong -Wformat -Werror=format-security
> -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro plink.c plink_assoc.c
> plink_calc.c plink_cluster.c plink_cnv.c plink_common.c plink_data.c
> plink_dosage.c plink_family.c plink_filter.c plink_glm.c plink_help.c
> plink_homozyg.c plink_lasso.c plink_ld.c plink_matrix.c plink_misc.c
> plink_perm.c plink_rserve.c plink_set.c plink_stats.c SFMT.c dcdflib.c pigz.c
> yarn.c Rconnection.cc hfile.c bgzf.c -o plink -llapack -lcblas -latlas -lm
> -lpthread -ldl -lz
> In file included from plink.c:19:0:
> plink_common.h:62:19: error: expected unqualified-id before 'long'
> #define int64_t long long
> ^
>
> plink_common.h:62:19: error: expected ';' before 'long'
> plink_common.h:62:24: error: declaration does not declare anything
> [-fpermissive]
> #define int64_t long long
> ^
>
> plink_common.h:61:20: error: expected unqualified-id before 'unsigned'
> #define uint64_t unsigned long long
> ^
>
> plink_common.h:61:20: error: expected ';' before 'unsigned'
> plink_common.h:61:34: error: declaration does not declare anything
> [-fpermissive]
> #define uint64_t unsigned long long
> ^
>
--- End Message ---
--- Begin Message ---
Source: plink1.9
Source-Version: 1.90~b3.31-160203-1
We believe that the bug you reported is fixed in the latest version of
plink1.9, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dylan Aïssi <[email protected]> (supplier of updated plink1.9 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 04 Feb 2016 22:12:20 +0100
Source: plink1.9
Binary: plink1.9
Architecture: source
Version: 1.90~b3.31-160203-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Dylan Aïssi <[email protected]>
Description:
plink1.9 - whole-genome association analysis toolset
Closes: 811910
Changes:
plink1.9 (1.90~b3.31-160203-1) unstable; urgency=low
.
* New upstream release (Closes: #811910)
* debian/control:
- Standards-Version: 3.9.7 (no changes needed)
- Fixed lintian vcs-field-uses-insecure-uri
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