Your message dated Wed, 10 Feb 2016 09:51:10 +0000 with message-id <[email protected]> and subject line Bug#814299: fixed in plast 2.3.1+dfsg-2 has caused the Debian Bug report #814299, regarding plast: FTBFS without SSE2 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 814299: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=814299 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: plast Version: 2.3.1+dfsg-1 Severity: serious Justification: fails to build from source Hi, Andreas. Builds of plast for architectures besides the handful that (always) support SSE2 have been failing, per the log excerpt below. Please take a look, and either arrange to accommodate the remaining platforms or officially declare plast to be Architecture: any-amd64 x32 Thanks! /«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:28:10: warning: #warning error undefined __SSE3__ or __SSE2__ [-Wcpp] #warning error undefined __SSE3__ or __SSE2__ ^ /«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp: In member function 'void algo::hits::gapped::SmallGapHitIteratorSSE8::computeScores(size_t, const LETTER*, const LETTER*, int*)': /«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:294:5: error: '__m128i' was not declared in this scope __m128i vscore_gap_col; ^ [...] /«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:306:13: error: expected ';' before 'vtemp1' __m128i vtemp1; ^ /«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:309:5: error: 'vgap_extend' was not declared in this scope vgap_extend = _mm_set1_epi16 (-_parameters->extendGapCost); ^ /«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:309:62: error: '_mm_set1_epi16' was not declared in this scope vgap_extend = _mm_set1_epi16 (-_parameters->extendGapCost); ^ [...] /«BUILDDIR»/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:450:54: error: '_mm_extract_epi16' was not declared in this scope scores[0] = _mm_extract_epi16 (vbest_score,0); ^ CMakeFiles/PlastLibrary.dir/build.make:1193: recipe for target 'CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o' failed
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--- Begin Message ---Source: plast Source-Version: 2.3.1+dfsg-2 We believe that the bug you reported is fixed in the latest version of plast, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated plast package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 10 Feb 2016 09:22:31 +0100 Source: plast Binary: plast plast-example Architecture: source amd64 all Version: 2.3.1+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: plast - Parallel Local Sequence Alignment Search Tool plast-example - Parallel Local Sequence Alignment Search Tool (example data) Closes: 814299 Changes: plast (2.3.1+dfsg-2) unstable; urgency=medium . * Make sure wrapper script is calling bash * Restrict to architectures featuring SSE Closes: #814299 * Fix spelling * Add Upstream-Contact Checksums-Sha1: d305ad9cedd4350a1e99ccc4661ab8a7774fc617 2041 plast_2.3.1+dfsg-2.dsc ffc8f3ac85ab1ae28fcdc04cc4bf910edac72996 18400 plast_2.3.1+dfsg-2.debian.tar.xz 50c77f3206f5805480cbe2f1382454a3fa5a610e 5269906 plast-dbgsym_2.3.1+dfsg-2_amd64.deb 7f33fc9fcf7a3759caecf370205703676eba510f 6363314 plast-example_2.3.1+dfsg-2_all.deb 2663c220066b3514d546eebe03a08a9ddd1084e5 572936 plast_2.3.1+dfsg-2_amd64.deb Checksums-Sha256: a7699f87e5127b7d560fa8e2e5394eb139f72e4df7b6428a3b240fceafeebed7 2041 plast_2.3.1+dfsg-2.dsc 9d22d17dace5f4c4fe4c7f1d3ed639bccdc7105718db86bd0d90c71c34769339 18400 plast_2.3.1+dfsg-2.debian.tar.xz e55e1ea5dd8d63f9213edcfe02e647c7125292cd31a7b76479b83d452966eb62 5269906 plast-dbgsym_2.3.1+dfsg-2_amd64.deb 967a11687e62686cbe77cb7ba6e8a2d850a059dac67e7a665ab8c7dbde37abf5 6363314 plast-example_2.3.1+dfsg-2_all.deb 54d10271bc7bc08ffe5f8f3a4f12dfa6a9813bee022983b9f0a1359193e31301 572936 plast_2.3.1+dfsg-2_amd64.deb Files: d951e6cac0fe25d4b7104ad30f00c422 2041 science optional plast_2.3.1+dfsg-2.dsc 1eb66c075117bf26cae0f63bd035c37d 18400 science optional plast_2.3.1+dfsg-2.debian.tar.xz 0d8ef469182067d4d3fedc586a0212c9 5269906 debug extra plast-dbgsym_2.3.1+dfsg-2_amd64.deb a0963e39abbbfb3000b36f0adb320a08 6363314 science optional plast-example_2.3.1+dfsg-2_all.deb 651ed49efa05ddf4784df5b24c835474 572936 science optional plast_2.3.1+dfsg-2_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJWuvdhAAoJEFeKBJTRxkbRqQIQAICVeV4ykFKWxwUwwEbNGy8k zrwI771sS5f+tXRhU8yiLe94roEjppfpZ9G9xFJvTbH0xQ6qPxgyNVpwkd+ZQsim +zSmFckdEMX31awW2oZdjnQBEJv/7s7QdxCEF9BSSg3Gkz1ceXrZV4IZIkoYlAgc ptzXIP3NfY4MaUZY0IBcnAGv9uUb8TwmyCevYoGpaGk4dfivqDW3ImdCofY2R+G2 YsNezeYX0lS+7bDp8/G8iJvTzbRvVqzyjAhucy1G2yzYgXJx6WlMuZXcUa9fK83O 8s9yU8ab6sPfN2iRuIqbQVzklnH/M8ROkVouJWP/euCfGKf77eFAOlEvxnJjtWYF ARvr4vTL5Bf+sp7csXhZtRksilqpW/nUZ76riqM8abn9K3Mbbml1g3qKMUk4qadQ IE/dUALmfO0ZUegiDgpaZ5UrjriiE2xXBfllu8uYvWgKJm//3mC6Ihq/wUiPqQUU AclQzc02iNbtsh1F/f3zuo9bAnLfb1Sn8ZV1DhzJLBEDzJCwJp/P2dED4gBq42kg ihjZPnNHpBWBL7QtlybkUPTn9tB/hRmmBMpT4dajCFdL9SYFUX16M0apJQ2DJDty SowcX/l4E9pEmNu3T9pB0ZwQUnMP94m+QIf12z9hoeO4FxbHv4qbninfqZg/e3kn uxRoXac48tT6yn/eQxKV =/ITL -----END PGP SIGNATURE-----
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