Your message dated Fri, 08 Apr 2016 18:37:56 +0000
with message-id <[email protected]>
and subject line Bug#811633: fixed in ray 2.3.1-3
has caused the Debian Bug report #811633,
regarding FTBFS with GCC 6: cannot convert x to y
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
811633: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811633
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: ray
Version: 2.3.1-2
Severity: important
User: [email protected]
Usertags: ftbfs-gcc-6 gcc-6-cannot-convert
This package fails to build with GCC 6. GCC 6 has not been released
yet, but it's expected that GCC 6 will become the default compiler for
stretch.
Note that only the first error is reported; there might be more. You
can find a snapshot of GCC 6 in experimental. To build with GCC 6,
you can set CC=gcc-6 CXX=g++-6 explicitly.
> sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux
...
> CXX code/GeneOntology/KeyEncoder.o
> CXX code/GeneOntology/GeneOntology.o
> In file included from /usr/lib/openmpi/include/mpi.h:253:0,
> from RayPlatform/RayPlatform/memory/DirtyBuffer.h:27,
> from RayPlatform/RayPlatform/memory/RingAllocator.h:25,
> from
> RayPlatform/RayPlatform/communication/VirtualCommunicator.h:28,
> from ./code/Searcher/Searcher.h:39,
> from code/GeneOntology/GeneOntology.h:26,
> from code/GeneOntology/GeneOntology.cpp:25:
> /usr/lib/openmpi/include/mpi_portable_platform.h:374:34: warning: invalid
> suffix on literal; C++11 requires a space between literal and string macro
> [-Wliteral-suffix]
>
> _STRINGIFY(__GNUC__)"."_STRINGIFY(__GNUC_MINOR__)"."_STRINGIFY(__GNUC_PATCHLEVEL__)
> ^
>
> /usr/lib/openmpi/include/mpi_portable_platform.h:374:63: warning: invalid
> suffix on literal; C++11 requires a space between literal and string macro
> [-Wliteral-suffix]
>
> _STRINGIFY(__GNUC__)"."_STRINGIFY(__GNUC_MINOR__)"."_STRINGIFY(__GNUC_PATCHLEVEL__)
> ^
>
> code/GeneOntology/GeneOntology.cpp: In member function 'bool
> GeneOntology::fetchArguments()':
> code/GeneOntology/GeneOntology.cpp:221:20: error: cannot convert
> 'std::ifstream {aka std::basic_ifstream<char>}' to 'bool' in initialization
> bool test1Result=test1;
> ^~~~~
>
> code/GeneOntology/GeneOntology.cpp:230:20: error: cannot convert
> 'std::ifstream {aka std::basic_ifstream<char>}' to 'bool' in initialization
> bool test2Result=test2;
> ^~~~~
>
> Makefile:160: recipe for target 'code/GeneOntology/GeneOntology.o' failed
> make[2]: *** [code/GeneOntology/GeneOntology.o] Error 1
--
Martin Michlmayr
Linux for HPE Helion, Hewlett Packard Enterprise
--- End Message ---
--- Begin Message ---
Source: ray
Source-Version: 2.3.1-3
We believe that the bug you reported is fixed in the latest version of
ray, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <[email protected]> (supplier of updated ray package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 08 Apr 2016 16:03:18 +0000
Source: ray
Binary: ray ray-doc ray-extra
Architecture: source amd64 all
Version: 2.3.1-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Sascha Steinbiss <[email protected]>
Description:
ray - de novo genome assemblies of next-gen sequencing data
ray-doc - focumentation for ray parallel de novo genome assembler
ray-extra - Scripts and XSL sheets for post-processing for ray
Closes: 811633
Changes:
ray (2.3.1-3) unstable; urgency=medium
.
[ Sascha Steinbiss ]
* Team upload.
* Fix FTBFS with GCC6.
Closes: #811633
.
[ Andreas Tille ]
* cme fix dpkg-control
* Better hardening
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Files:
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82f693c4db60af4328263c9279701009 449727 science optional ray_2.3.1.orig.tar.bz2
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