Your message dated Sun, 10 Apr 2016 22:00:22 +0000
with message-id <[email protected]>
and subject line Bug#820621: fixed in python-biom-format 2.1.5+dfsg-2
has caused the Debian Bug report #820621,
regarding python-biom-format: FTBFS when built with dpkg-buildpackage -A
(build-indep fails)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
820621: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=820621
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:python-biom-format
Version: 2.1.5+dfsg-1
User: [email protected]
Usertags: binary-indep
Severity: important
Dear maintainer:
I tried to build this package with "dpkg-buildpackage -A"
(i.e. only architecture-independent packages), and it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
dh build-indep --with python2,python3,bash-completion --buildsystem=pybuild
dh_testdir -i -O--buildsystem=pybuild
dh_update_autotools_config -i -O--buildsystem=pybuild
dh_auto_configure -i -O--buildsystem=pybuild
pybuild --configure --test-nose -i python{version} -p 2.7 --dir .
I: pybuild base:184: python2.7 setup.py config
running config
pybuild --configure --test-nose -i python{version} -p 3.5 --dir .
I: pybuild base:184: python3.5 setup.py config
running config
debian/rules override_dh_auto_build-indep
[... snipped ...]
======================================================================
ERROR: Failure: ImportError (No module named biom.parse)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in
loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in
importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in
importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File
"/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_parse.py",
line 19, in <module>
from biom.parse import generatedby, MetadataMap, parse_biom_table, parse_uc
ImportError: No module named biom.parse
======================================================================
ERROR: Failure: ImportError (No module named biom)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in
loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in
importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in
importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File
"/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_table.py",
line 23, in <module>
from biom import example_table
ImportError: No module named biom
======================================================================
ERROR: Failure: ImportError (No module named biom.table)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in
loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in
importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in
importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File
"/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_util.py",
line 20, in <module>
from biom.table import Table
ImportError: No module named biom.table
----------------------------------------------------------------------
Ran 11 tests in 0.002s
FAILED (errors=11)
E: pybuild pybuild:274: test: plugin distutils failed with: exit code=1: cd
/<<BUILDDIR>>/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build;
python2.7 -m nose tests
dh_auto_test: pybuild --test --test-nose -i python{version} -p 2.7 --dir .
returned exit code 13
debian/rules:14: recipe for target 'build-indep' failed
make: *** [build-indep] Error 25
dpkg-buildpackage: error: debian/rules build-indep gave error exit status 2
--------------------------------------------------------------------------------
To reproduce, please build the package with "dpkg-buildpackage -A".
That should create python-biom-format-doc_2.1.5+dfsg-1_all.deb
and only such package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: python-biom-format
Source-Version: 2.1.5+dfsg-2
We believe that the bug you reported is fixed in the latest version of
python-biom-format, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated python-biom-format
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 10 Apr 2016 21:45:01 +0200
Source: python-biom-format
Binary: python-biom-format python3-biom-format python-biom-format-doc
biom-format-tools
Architecture: source amd64 all
Version: 2.1.5+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
biom-format-tools - command-line tools for BIOM format
python-biom-format - Biological Observation Matrix (BIOM) format (Python 2)
python-biom-format-doc - documentation for BIOM format
python3-biom-format - Biological Observation Matrix (BIOM) format (Python 3)
Closes: 820028 820621
Changes:
python-biom-format (2.1.5+dfsg-2) unstable; urgency=medium
.
* Breaks+Replaces: python-biom-format (<= 2.1+dfsg-1)
Closes: #820028
* Enable building arch all packages separately
Closes: #820621
Checksums-Sha1:
112e15d31c5ba35edc1862454d249083eb5df0c4 2632
python-biom-format_2.1.5+dfsg-2.dsc
87c6af725d8c655b920aeabaed1d98a3d03931f0 7636
python-biom-format_2.1.5+dfsg-2.debian.tar.xz
9c5aa365d419fe1fc85b18d9610853288be22644 10878
biom-format-tools_2.1.5+dfsg-2_amd64.deb
607d24f22e8997655da1602e0cdd61f054b79412 218000
python-biom-format-dbgsym_2.1.5+dfsg-2_amd64.deb
15f80d9a5389187f7a8af99952edfac26482bcfc 65268
python-biom-format-doc_2.1.5+dfsg-2_all.deb
86be5e5a12ee653e3647082bb2d5406d75b0e6d1 171176
python-biom-format_2.1.5+dfsg-2_amd64.deb
8b5156fe77fc0db16f56c27cc75355fbb4dabb1c 186524
python3-biom-format-dbgsym_2.1.5+dfsg-2_amd64.deb
57e16014ce9b69102730deb1c82d382f70bbf198 160656
python3-biom-format_2.1.5+dfsg-2_amd64.deb
Checksums-Sha256:
bf3908709c94b66355ffdf48b4bd1113edbbbe00151ff86496a6cca3393d23ac 2632
python-biom-format_2.1.5+dfsg-2.dsc
fe785fa5e0db69d6cc8b42998e9c503d0e1c465110dd7caed07cd2b6ba7ff0fc 7636
python-biom-format_2.1.5+dfsg-2.debian.tar.xz
03f0982afdfbe2ebdadacffdb2da9998738ce964364075cce3ff6abbf7f94305 10878
biom-format-tools_2.1.5+dfsg-2_amd64.deb
fe8f4cd6336f024d300a03254d8a8b4d28b5c2e889bd77a8aa02f09c64ec1d67 218000
python-biom-format-dbgsym_2.1.5+dfsg-2_amd64.deb
91d99e575e8884d8c562c5f7b82be074f73366fc1b9879237fdcfe9322f36adb 65268
python-biom-format-doc_2.1.5+dfsg-2_all.deb
05124cdfb5309399155b7bf8628c16f044e1dad9161164872f2922d22ec42036 171176
python-biom-format_2.1.5+dfsg-2_amd64.deb
99aeaf85975b2a720e622d7c9b9bd107fca8114dc395fe063b4cada199fd460d 186524
python3-biom-format-dbgsym_2.1.5+dfsg-2_amd64.deb
556c55e0a68032c1f6a3e35488579c7e3939f804d786f0084bf779cdc44f0a84 160656
python3-biom-format_2.1.5+dfsg-2_amd64.deb
Files:
dfa7f26b36f8d2bb0f0ffc81c99e53ed 2632 python optional
python-biom-format_2.1.5+dfsg-2.dsc
85c0d2842900293905f0f3b28d064101 7636 python optional
python-biom-format_2.1.5+dfsg-2.debian.tar.xz
fab6cbfaddfe391a468aef02fb11e5ad 10878 misc optional
biom-format-tools_2.1.5+dfsg-2_amd64.deb
60b3cf61ed49ac6d535b166083888e0d 218000 debug extra
python-biom-format-dbgsym_2.1.5+dfsg-2_amd64.deb
763114a6fd0469022551ddba7956e101 65268 doc optional
python-biom-format-doc_2.1.5+dfsg-2_all.deb
9d0b60e42e0810c1bb18c55365b4850a 171176 python optional
python-biom-format_2.1.5+dfsg-2_amd64.deb
22c66b3612de4ce59b7004a6652845dc 186524 debug extra
python3-biom-format-dbgsym_2.1.5+dfsg-2_amd64.deb
8ed64ab62beceda76ceedaac44f784f3 160656 python optional
python3-biom-format_2.1.5+dfsg-2_amd64.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1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=YBDD
-----END PGP SIGNATURE-----
--- End Message ---
