Your message dated Thu, 09 Jun 2016 11:55:57 +0000
with message-id <[email protected]>
and subject line Bug#826841: fixed in python-ruffus 2.6.3+dfsg-3
has caused the Debian Bug report #826841,
regarding python-ruffus: failing tests due to missing dot executable
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
826841: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=826841
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-ruffus
Severity: normal
Tags: patch
User: [email protected]
Usertags: ftbfs
Dear Maintainer,
python-ruffus fails to complete its test suite due to a missing dependency on
graphviz, which provides the 'dot' executable. During rebuilding the package
as part of the Reproducible Builds efforts, this was noticed as it resulted in
the following error:
======================================================================
ERROR: test_ruffus (test_pipeline_printout_graph.Test_ruffus)
----------------------------------------------------------------------
Traceback (most recent call last):
File "test_pipeline_printout_graph.py", line 150, in test_ruffus
no_key_legend = True)
File "/build/python-ruffus-2.6.3+dfsg/ruffus/task.py", line 4659, in
pipeline_printout_graph
signal_callback=is_node_up_to_date)
File "/build/python-ruffus-2.6.3+dfsg/ruffus/graph.py", line 1175, in
graph_printout
raise subprocess.CalledProcessError(retcode, cmd + "\n" +
"\n".join([str(result_str), str(error_str)]))
CalledProcessError: Command 'dot -Gsize='(11,8)' -Gdpi='120' -Tjpg <
/tmp/tmpoeRqMB.dot
/bin/sh: dot : commande introuvable
' returned non-zero exit status 127
I was able to fix this problem by adding the necessary dependencies and will
push a
fix to the Debian Med Git repo soon.
Thanks
Sascha
--- End Message ---
--- Begin Message ---
Source: python-ruffus
Source-Version: 2.6.3+dfsg-3
We believe that the bug you reported is fixed in the latest version of
python-ruffus, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <[email protected]> (supplier of updated python-ruffus
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 09 Jun 2016 09:40:53 +0000
Source: python-ruffus
Binary: python-ruffus python3-ruffus python-ruffus-doc
Architecture: source all
Version: 2.6.3+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Sascha Steinbiss <[email protected]>
Description:
python-ruffus - Python computation pipeline library widely used in
bioinformatics
python-ruffus-doc - documentation for python-ruffus computation pipeline
library
python3-ruffus - Python3 computation pipeline library widely used in
bioinformatic
Closes: 826841
Changes:
python-ruffus (2.6.3+dfsg-3) unstable; urgency=medium
.
[ Sascha Steinbiss ]
* Team upload.
* Add missing dependency on Graphviz (fixes FTFBS on reproducible
builds pipeline due to failing build time tests)
Closes: #826841
.
[ Andreas Tille ]
* cme fix dpkg-control
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