Your message dated Fri, 08 Jul 2016 16:24:13 +0000
with message-id <[email protected]>
and subject line Bug#830358: fixed in pbgenomicconsensus 2.0.0+20160420-1
has caused the Debian Bug report #830358,
regarding pbgenomicconsensus: FTBFS: Tests failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
830358: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=830358
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: pbgenomicconsensus
Version: 2.0.0+20151210-1
Severity: serious
Tags: stretch sid
User: [email protected]
Usertags: qa-ftbfs-20160707 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> self.assertEquals(rcode, 0, "Emitting tool contract failed for
> '{e}'".format(e=emit_tc_exe))
> AssertionError: Emitting tool contract failed for 'gffToVcf
> --emit-tool-contract >
> /tmp/tmpJ3Vk64rtc-test/tmpwprChk-TestGffToVcf-tool_contract.json'
> -------------------- >> begin captured logging << --------------------
> pbcommand.testkit.core: DEBUG: Driver gffToVcf --emit-tool-contract
> pbcommand.testkit.core: DEBUG: input files
> ['/«BUILDDIR»/pbgenomicconsensus-2.0.0+20151210/tests/data/converters/variants.gff.gz']
> pbcommand.testkit.core: DEBUG: running in /tmp/tmpJ3Vk64rtc-test
> --------------------- >> end captured logging << ---------------------
>
> ----------------------------------------------------------------------
> XML: /«BUILDDIR»/pbgenomicconsensus-2.0.0+20151210/nosetests.xml
> ----------------------------------------------------------------------
> Ran 36 tests in 0.595s
>
> FAILED (SKIP=2, failures=2)
> make[2]: *** [tests] Error 1
> Makefile:15: recipe for target 'tests' failed
The full build log is available from:
http://people.debian.org/~lucas/logs/2016/07/07/pbgenomicconsensus_2.0.0+20151210-1_unstable_reb.normal.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: pbgenomicconsensus
Source-Version: 2.0.0+20160420-1
We believe that the bug you reported is fixed in the latest version of
pbgenomicconsensus, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Afif Elghraoui <[email protected]> (supplier of updated pbgenomicconsensus
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 08 Jul 2016 08:59:07 -0700
Source: pbgenomicconsensus
Binary: pbgenomicconsensus python-pbgenomicconsensus
Architecture: source
Version: 2.0.0+20160420-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Afif Elghraoui <[email protected]>
Description:
pbgenomicconsensus - Pacific Biosciences variant and consensus caller
python-pbgenomicconsensus - Pacific Biosciences variant and consensus caller
(Python 2)
Closes: 830358
Changes:
pbgenomicconsensus (2.0.0+20160420-1) unstable; urgency=medium
.
* Imported Upstream version 2.0.0+20160420 (upstream git 782a362)
(Closes: #830358)
* Add explicit, versioned build-dependencies
* Install python scripts at build time rather than patching setup.py
* Redo and reorganize manpages
* Bump Standards-Version to 3.9.8
* Suggest consensuscore2
* Install new examples
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