Your message dated Sat, 06 Aug 2016 01:21:56 +0000
with message-id <[email protected]>
and subject line Bug#833541: fixed in ncbi-blast+ 2.4.0-3
has caused the Debian Bug report #833541,
regarding ncbi-blast+: FTBFS on x32: bad assembly constraints
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
833541: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=833541
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: ncbi-blast+
Version: 2.4.0-2
Severity: important
Justification: fails to build from source (but built successfully in the past)
Builds of BLAST+ 2.4.0 (and 2.3.0, oops) have been failing on x32:
/.../ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:237: Error: incorrect
register `%esi' used with `q' suffix
/.../ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:237: Error: incorrect
register `%esi' used with `q' suffix
/.../ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:237: Error: incorrect
register `%eax' used with `q' suffix
/.../ncbi-blast+-2.4.0/c++/include/corelib/ncbicntr.hpp:237: Error: incorrect
register `%edx' used with `q' suffix
We should either adapt the inline assembly to handle x32 or do without
it altogether here (as already done on most architectures).
--- End Message ---
--- Begin Message ---
Source: ncbi-blast+
Source-Version: 2.4.0-3
We believe that the bug you reported is fixed in the latest version of
ncbi-blast+, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Aaron M. Ucko <[email protected]> (supplier of updated ncbi-blast+ package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 05 Aug 2016 19:47:24 -0400
Source: ncbi-blast+
Binary: ncbi-blast+ ncbi-blast+-legacy
Architecture: source amd64 all
Version: 2.4.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Aaron M. Ucko <[email protected]>
Description:
ncbi-blast+ - next generation suite of BLAST sequence search tools
ncbi-blast+-legacy - NCBI Blast legacy call script
Closes: 833538 833539 833541
Changes:
ncbi-blast+ (2.4.0-3) unstable; urgency=medium
.
* debian/rules:
- Properly build (but don't install) run_with_lock. (Closes: #833538.)
- Comment out nostrip check, which yielded a useless dbgsym package.
* Reinstate and refresh the hurd_fixes patch, which mostly still applies.
(Closes: #833539.)
* Add a new support_x32 patch to avoid picking up wrong inline assembly.
(Closes: #833541.)
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