Your message dated Thu, 25 Aug 2016 22:22:23 +0000
with message-id <[email protected]>
and subject line Bug#834862: fixed in hisat2 2.0.4-2
has caused the Debian Bug report #834862,
regarding hisat2: FTBFS on non-x86: -msse2 (and often -m32) unrecognized
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
834862: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=834862
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: hisat2
Version: 2.0.4-1
Severity: important
Justification: fails to build from source
Builds of hisat2 for non-x86 architectures failed due to its usage of
-msse2, and in some cases also -m32. Even where supported, these
options can limit portability, or in the case of -m32, select the
wrong ABI.
g++: error: unrecognized command line option ‘-m32’
g++: error: unrecognized command line option ‘-msse2’
Could you please take a look?
Thanks!
--- End Message ---
--- Begin Message ---
Source: hisat2
Source-Version: 2.0.4-2
We believe that the bug you reported is fixed in the latest version of
hisat2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <[email protected]> (supplier of updated hisat2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
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Hash: SHA512
Format: 1.8
Date: Thu, 25 Aug 2016 15:46:42 +0000
Source: hisat2
Binary: hisat2
Architecture: source amd64
Version: 2.0.4-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Sascha Steinbiss <[email protected]>
Description:
hisat2 - graph-based alignment of short nucleotide reads to many genomes
Closes: 834862 834864
Changes:
hisat2 (2.0.4-2) unstable; urgency=medium
.
* Team upload.
* Fix Vcs-Git.
* Fix build on kFreeBSD. Thanks to Steven Chamberlain for the patch.
Closes: #834864
* Make build reproducible.
- Set C(XX,PP)FLAGS to make sure -fdebug-prefix-map is set.
- Set TZ=UTC.
* Remove arch-restrictive compiler flags.
Closes: #834862
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