Your message dated Thu, 25 Aug 2016 22:22:23 +0000 with message-id <[email protected]> and subject line Bug#834864: fixed in hisat2 2.0.4-2 has caused the Debian Bug report #834864, regarding hisat2: FTBFS on kfreebsd-amd64: help2man: can't get `--help' info from ./hisat2 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 834864: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=834864 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: hisat2 Version: 2.0.4-1 Severity: important Justification: fails to build from source The kfreebsd-amd64 build of hisat2 failed: help2man ./hisat2 --no-info --name \ 'graph-based alignment of short nucleotide reads to many genomes, wrapper script' \ > debian/hisat2.1 help2man: can't get `--help' info from ./hisat2 Try `--no-discard-stderr' if option outputs to stderr debian/rules:15: recipe for target 'override_dh_auto_build' failed Could you please take a look? Thanks!
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--- Begin Message ---Source: hisat2 Source-Version: 2.0.4-2 We believe that the bug you reported is fixed in the latest version of hisat2, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Sascha Steinbiss <[email protected]> (supplier of updated hisat2 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 25 Aug 2016 15:46:42 +0000 Source: hisat2 Binary: hisat2 Architecture: source amd64 Version: 2.0.4-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Sascha Steinbiss <[email protected]> Description: hisat2 - graph-based alignment of short nucleotide reads to many genomes Closes: 834862 834864 Changes: hisat2 (2.0.4-2) unstable; urgency=medium . * Team upload. * Fix Vcs-Git. * Fix build on kFreeBSD. Thanks to Steven Chamberlain for the patch. Closes: #834864 * Make build reproducible. - Set C(XX,PP)FLAGS to make sure -fdebug-prefix-map is set. - Set TZ=UTC. * Remove arch-restrictive compiler flags. Closes: #834862 Checksums-Sha1: 39802a035ba1502b3410fbabc0cbc5a6ed24da01 1928 hisat2_2.0.4-2.dsc 7587ebf94a9e136161c2530c870ac6d4d3772e53 5120 hisat2_2.0.4-2.debian.tar.xz bcca8bf7d3a974c4a4064f56d4eeffc865da156e 9444572 hisat2-dbgsym_2.0.4-2_amd64.deb a428b10288616b54852d06c2162cff262b6ac33c 1241512 hisat2_2.0.4-2_amd64.deb Checksums-Sha256: 31e9bf5954397b30bd73a29f69703e161a3b46dd31c3c75fc417b898ab4637a0 1928 hisat2_2.0.4-2.dsc cd583f76ba39be59ddc76dbe755025887e6bb835739267678b37d4b619fe0c9f 5120 hisat2_2.0.4-2.debian.tar.xz 5a74a597107142caf916603b66c19c8b113ac3f8c0b86239d477ed2600f0aee2 9444572 hisat2-dbgsym_2.0.4-2_amd64.deb bb1265fa5be7d2ac9a272dc0ae1714ce11d3dc997d9a89d291763b2b1fab72c9 1241512 hisat2_2.0.4-2_amd64.deb Files: dd09285dda0bfcaad9964eebbe93d5a6 1928 science optional hisat2_2.0.4-2.dsc d201e0a0f927645212476afbf1d2be0a 5120 science optional hisat2_2.0.4-2.debian.tar.xz e4a8445e6bdcc151acdf83476eca9d8f 9444572 debug extra hisat2-dbgsym_2.0.4-2_amd64.deb 069da29c2a7161ecd17b880419cfabf2 1241512 science optional hisat2_2.0.4-2_amd64.deb -----BEGIN PGP SIGNATURE----- iQIcBAEBCgAGBQJXv1UxAAoJEOjTeuLwn0hyFzQP/3qsLZxtVvQfrSE10cvLQ0v+ FsF09YVAUrX6hrswJd1k9VscXC8j7Ey3jOiAcgvkDIJ/TDFyXTykZ/OODD4wGXfd xYfN2v5Urr0vru1by9x7RvLsfyMCbLwRdgTJH7Esk+lUpHtvG0hUv/rMqasg30e2 2zAIvrlz9vb2rlAeK8oLGlD1NC3ala7SN3lTnGbyLX8VroQYGfbE86X40IopBttb kCxrV4cHv5NptTDjLO7ia8YF9qTCjkRERUp5ZPgCyf0avrBqT+Za5UChTIOIdidB xY1lS461LuBVvdkcaqVNe2NlwFDCjwVyeNI5NtSfVDIGjCUjTq9iDYWJq1d7ur0D TfMCgPX8eYqB18gxd7EUfAe4WhmKBIdQrADFp69V9DbmmRlenxUZCV0JkK6eiVaZ oSarZyKEF3pYktn8lpO2GbtxwY1LpRw9Rm6SlGRgdlCOrKSbdMJ5wWy/ZQ+JtOJw KuvboBPjr9hZbYmeta9MtxrFS2+qOmdwndJRaouDsB6aWlr4YSsmLfgTNkSSSVad rW8agRbt12iaiLGZZjLeU1HcFeJ9JnHv1rD/gf7xexD/bZqADMVIfJ20SqMen4d5 Hy8K/+FvIQWvPPdi13Tv7jIpijZCIEo0LE58zFMink5VCqEq2H8qW34jFEP02LhV OpSRs5Ltp4EwkMKCEX9K =R0tf -----END PGP SIGNATURE-----
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