Your message dated Mon, 05 Sep 2016 05:06:07 +0000 with message-id <[email protected]> and subject line Bug#836538: fixed in nipy 0.4.0+git26-gf8d3149-2 has caused the Debian Bug report #836538, regarding nipy: FTBFS in testing (failing tests) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 836538: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836538 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:nipy Version: 0.4.0+git26-gf8d3149-1 Severity: serious Dear maintainer: I tried to build this package in stretch with "dpkg-buildpackage -A" (which is what the "Arch: all" autobuilder would do to build it) but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-indep dh --buildsystem=python_distutils --with=python2 build-indep dh_testdir -i -O--buildsystem=python_distutils dh_update_autotools_config -i -O--buildsystem=python_distutils dh_auto_configure -i -O--buildsystem=python_distutils debian/rules override_dh_auto_build make[1]: Entering directory '/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149' dh_auto_build pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions python-dbg setup.py build --force lapack_opt_info: openblas_lapack_info: libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu'] [... snipped ...] ../<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/labs/viz_tools/slicers.py:376: UserWarning: empty mask get_mask_bounds(not_mask, affine) .................S../<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/labs/mask.py:235: VisibleDeprecationWarning: using a non-integer number instead of an integer will result in an error in the future delta = sorted_input[limiteinf + 1:limitesup + 1] \ /<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/labs/mask.py:236: VisibleDeprecationWarning: using a non-integer number instead of an integer will result in an error in the future - sorted_input[limiteinf:limitesup] /<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/labs/mask.py:238: VisibleDeprecationWarning: using a non-integer number instead of an integer will result in an error in the future threshold = 0.5 * (sorted_input[ia + limiteinf] /<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/labs/mask.py:239: VisibleDeprecationWarning: using a non-integer number instead of an integer will result in an error in the future + sorted_input[ia + limiteinf + 1]) ................/usr/lib/python2.7/dist-packages/numpy/lib/function_base.py:2569: RuntimeWarning: invalid value encountered in true_divide c /= stddev[:, None] /usr/lib/python2.7/dist-packages/numpy/lib/function_base.py:2570: RuntimeWarning: invalid value encountered in true_divide c /= stddev[None, :] ......................................................../<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/modalities/fmri/tests/test_dmtx.py:407: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison idx = paradigm.onset[paradigm.con_id == 0].astype(np.int) /<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/modalities/fmri/tests/test_dmtx.py:407: VisibleDeprecationWarning: using a boolean instead of an integer will result in an error in the future idx = paradigm.onset[paradigm.con_id == 0].astype(np.int) ../<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/modalities/fmri/tests/test_dmtx.py:429: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison idx = bp.onset[bp.con_id == 1].astype(np.int) /<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/modalities/fmri/tests/test_dmtx.py:429: VisibleDeprecationWarning: using a boolean instead of an integer will result in an error in the future idx = bp.onset[bp.con_id == 1].astype(np.int) ............/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/modalities/fmri/glm.py:581: UserWarning: Contrast for session 1 is null warn('Contrast for session %d is null' % i) ....................S.............................../<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/modalities/fmri/tests/test_utils.py:212: VisibleDeprecationWarning: using a non-integer number instead of an integer will result in an error in the future z1s = np.zeros((np.round(1./dt))) ...................................... ====================================================================== ERROR: nipy.io.tests.test_image_io.test_badfile ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/io/tests/test_image_io.py", line 44, in test_badfile assert_raises(ImageFileError, load_image, filename) File "/usr/lib/python2.7/dist-packages/numpy/testing/utils.py", line 1145, in assert_raises return nose.tools.assert_raises(*args,**kwargs) File "/usr/lib/python2.7/unittest/case.py", line 473, in assertRaises callableObj(*args, **kwargs) File "/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149/debian/tmp/usr/lib/python2.7/dist-packages/nipy/io/files.py", line 57, in load img = nib.load(filename) File "/usr/lib/python2.7/dist-packages/nibabel/loadsave.py", line 40, in load raise FileNotFoundError("No such file: '%s'" % filename) FileNotFoundError: No such file: 'bad_file.foo' ---------------------------------------------------------------------- Ran 4535 tests in 252.382s FAILED (SKIP=5, errors=1) debian/rules:57: recipe for target 'test' failed make[1]: *** [test] Error 1 make[1]: Leaving directory '/<<BUILDDIR>>/nipy-0.4.0+git26-gf8d3149' debian/rules:19: recipe for target 'binary-indep' failed make: *** [binary-indep] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit status 2 -------------------------------------------------------------------------------- It also fails in the reproducible builds autobuilders, so it's not a random thing. Thanks.
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--- Begin Message ---Source: nipy Source-Version: 0.4.0+git26-gf8d3149-2 We believe that the bug you reported is fixed in the latest version of nipy, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Yaroslav Halchenko <[email protected]> (supplier of updated nipy package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 04 Sep 2016 10:18:55 -0400 Source: nipy Binary: python-nipy python-nipy-lib python-nipy-lib-dbg python-nipy-doc Architecture: source all amd64 Version: 0.4.0+git26-gf8d3149-2 Distribution: unstable Urgency: medium Maintainer: NeuroDebian Team <[email protected]> Changed-By: Yaroslav Halchenko <[email protected]> Description: python-nipy - Analysis of structural and functional neuroimaging data python-nipy-doc - documentation and examples for NiPy python-nipy-lib - Analysis of structural and functional neuroimaging data python-nipy-lib-dbg - Analysis of structural and functional neuroimaging data Closes: 836538 Changes: nipy (0.4.0+git26-gf8d3149-2) unstable; urgency=medium . * debian/pathes picked up few fixes from upstream adjusting some tests for compatibility - 78ced182c4b4583c9a2ed3c1fc01764941560c72 TST: relax test precision a little for 32-bit (replaces "custom" up_relax_assumption patch) - 32cb61eab2e92525c2497294d3be40e361507c4e (fixed failing doctest) - 751531a2894e69383f75e6a9b97586e74759ab1b BF: allow for generic IOError-based exception to be thrown when loading non existing file (Closes: #836538) * .gitignore, debian/source/options - to not ignore .diff files since interfers with helper to CP them from upstream Checksums-Sha1: 1a91240821ddd5ac93aea2b7993d030a7f051f01 2477 nipy_0.4.0+git26-gf8d3149-2.dsc 08980ab4d166a83a510d9693ace97a5a0d62f8e4 9816 nipy_0.4.0+git26-gf8d3149-2.debian.tar.xz a6bbed569a4f3f14ea96643fbe2768aee9235e40 2830120 python-nipy-doc_0.4.0+git26-gf8d3149-2_all.deb 310761490be52173eaa3f8a113b2328a6436d78d 811730 python-nipy-lib-dbg-dbgsym_0.4.0+git26-gf8d3149-2_amd64.deb 896e14563ec10f5680a68ecf3695b3df51373211 653806 python-nipy-lib-dbg_0.4.0+git26-gf8d3149-2_amd64.deb 58a47c215dc514ead362ef91f83d1d3edcd0097f 2003652 python-nipy-lib-dbgsym_0.4.0+git26-gf8d3149-2_amd64.deb 1032f69e85574d48031d4e1875f154158d653eee 649642 python-nipy-lib_0.4.0+git26-gf8d3149-2_amd64.deb ef1c6826d126d37451bcd1c2183425aaaa89a286 738158 python-nipy_0.4.0+git26-gf8d3149-2_all.deb Checksums-Sha256: 317bca9b9f5d2abd8e3de2f5bd553a3165a44b102e524d39126e9d7d1788bbb6 2477 nipy_0.4.0+git26-gf8d3149-2.dsc 20d1cbbad300132dffe19dbe8ad3ad4e5eba40d192fc6828bef6c3a105e9e123 9816 nipy_0.4.0+git26-gf8d3149-2.debian.tar.xz a61a3dc771bbf0ec27860418a001e97f4b010a1c0931168478eb6d246050761c 2830120 python-nipy-doc_0.4.0+git26-gf8d3149-2_all.deb d623df3171325f961a913788549db550811c1bd622f4d3dcd8980cc4a6fabd4c 811730 python-nipy-lib-dbg-dbgsym_0.4.0+git26-gf8d3149-2_amd64.deb a8786ead740e4673f914654f3bad67167eb29a21adb26a97eb9cc39786745bdb 653806 python-nipy-lib-dbg_0.4.0+git26-gf8d3149-2_amd64.deb 798945dd9162a788c99da2cde24ebe0b825e6f9393040704d4e67bf8f40198d0 2003652 python-nipy-lib-dbgsym_0.4.0+git26-gf8d3149-2_amd64.deb 3504c52e331a8f16c196fa7252c0a62fba8dc98f4da85f22254b65869c2d07ad 649642 python-nipy-lib_0.4.0+git26-gf8d3149-2_amd64.deb aef555cdc74d7bd6e9b5ccf835a0af742ef60a5705dc962a26b7ac690264588e 738158 python-nipy_0.4.0+git26-gf8d3149-2_all.deb Files: d57fb522c243d5b4255550d5aedfc701 2477 python extra nipy_0.4.0+git26-gf8d3149-2.dsc 1fc6800689358febb40fb957bd0e6645 9816 python extra nipy_0.4.0+git26-gf8d3149-2.debian.tar.xz c4bee515b53ef03fbaa49188210e1fae 2830120 doc extra python-nipy-doc_0.4.0+git26-gf8d3149-2_all.deb 23777b80d217f869d897b97d46ed9ed5 811730 debug extra python-nipy-lib-dbg-dbgsym_0.4.0+git26-gf8d3149-2_amd64.deb 84c17ccdfa9632fbc0ad2fb978eb2701 653806 debug extra python-nipy-lib-dbg_0.4.0+git26-gf8d3149-2_amd64.deb 85286a839dd6e2b3ddfeee94a5392015 2003652 debug extra python-nipy-lib-dbgsym_0.4.0+git26-gf8d3149-2_amd64.deb 8c8c6bd92032932d28a6ec78aa94f9fa 649642 python extra python-nipy-lib_0.4.0+git26-gf8d3149-2_amd64.deb d991fb3c4db17b66379c71e9d998fff8 738158 python extra python-nipy_0.4.0+git26-gf8d3149-2_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJXzNfpAAoJEKLeI1Bi2jP6va0P/2Dhl5voyPtYaJF4+eMeMCmU ZgE3Ucb1dFt1n4VMTT2FUUibW7Zy1OekH7AX3u8VCf3VHn8lTeaA3qKzzTPD4bu2 nTTYJwsNq7SPteFa5dJJgyyCrL16QcSqEDtOQtAlvXnnHzFyAJKBxZZE/hzOml7+ 2xMoS7wRsajEyXw/RvcoX34TMFKKrHXiWCqF7P45aLsmT0FveN95Tv1vRMsF9ipQ AgSG+prC/kvq3VJmRrCc2vJiHqHFQmhmrxE1qXM55OmyS2H5612XRjI/xzeI3jRd Yg9xdnJniL2BkJufD0htns/rn1IUSZrWMsV12Gjr1r/sXq+FYS/djBmvU6iLjZg3 e9+K2TYFU2qWHCZCzRAGMnTgRgDgsGkdFdRRyhxUmNPwZZ95GlvdaT7gTfNrGPDO ZNaaP+Uv7jeJ13Ra6O2e9+xdusIwOjcBWlewwshRJyKMUb7NuShkEIcxyako9IT2 WCj+oao1o9bSUL/spQlKzPaMQODcT5h2CjtOqiYVwadAKiaqARM6ZfyhRXHfKCeU OAvJvOo63OAHWdttalkxlWp5Vydk2XFvv2Dyx+IDeSE/MG/MJFMzgfCiy6LO6zWQ sRA22ybtqLCWQtjfNRcWT6GuaxXiKDEeGt39KGwcLIo8lz8wLwJhyDhxU+1QYPul b2oatPgq1L9WAFR1VHFd =3yuo -----END PGP SIGNATURE-----
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