Your message dated Wed, 26 Oct 2016 12:48:54 +0000
with message-id <[email protected]>
and subject line Bug#839320: fixed in gubbins 2.1.0-2
has caused the Debian Bug report #839320,
regarding gubbins: FTBFS: Tests failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
839320: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=839320
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: gubbins
Version: 2.1.0-1
Severity: serious
Tags: stretch sid
User: [email protected]
Usertags: qa-ftbfs-20160930 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
>
> ======================================================================
> ERROR: test_change_window_size
> (test_external_dependancies.TestExternalDependancies)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/<<PKGBUILDDIR>>/python/gubbins/tests/test_external_dependancies.py",
> line 34, in test_change_window_size
> gubbins_runner.parse_and_run()
> File "/<<PKGBUILDDIR>>/python/gubbins/common.py", line 263, in parse_and_run
> sys.exit("Failed while running RAxML internal sequence reconstruction")
> SystemExit: Failed while running RAxML internal sequence reconstruction
>
> ----------------------------------------------------------------------
> Ran 77 tests in 9.197s
>
> FAILED (errors=1)
> debian/rules:23: recipe for target 'override_dh_auto_test' failed
If the failure looks somehow time/timezone related:
Note that this rebuild was performed without the 'tzdata' package
installed in the chroot. tzdata used be (transitively) part of
build-essential, but it no longer is. If this package requires it to
build, it should be added to build-depends. For the release team's
opinion on this, see
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836940#185
The full build log is available from:
http://aws-logs.debian.net/2016/09/30/gubbins_2.1.0-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: gubbins
Source-Version: 2.1.0-2
We believe that the bug you reported is fixed in the latest version of
gubbins, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <[email protected]> (supplier of updated gubbins package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 26 Oct 2016 14:26:18 +0200
Source: gubbins
Binary: gubbins
Architecture: source amd64
Version: 2.1.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Sascha Steinbiss <[email protected]>
Description:
gubbins - phylogenetic analysis of genome sequences
Closes: 839320
Changes:
gubbins (2.1.0-2) unstable; urgency=medium
.
* Team upload.
* Disable tests to address FTBFS caused by failed build time tests
relying on external dependencies.
Closes: #839320
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