Your message dated Wed, 02 Nov 2016 13:49:01 +0000 with message-id <[email protected]> and subject line Bug#842914: fixed in r-bioc-cummerbund 2.16.0-2 has caused the Debian Bug report #842914, regarding r-bioc-cummerbund: FTBFS (no package called 'foreign') to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 842914: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=842914 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:r-bioc-cummerbund Version: 2.16.0-1 Severity: serious Dear maintainer: I tried to build this package in stretch with "dpkg-buildpackage -A" (which is what the "Arch: all" autobuilder would do to build it) but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-indep dh build-indep --buildsystem R dh_testdir -i -O--buildsystem=R dh_update_autotools_config -i -O--buildsystem=R dh_auto_configure -i -O--buildsystem=R dh_auto_build -i -O--buildsystem=R dh_auto_test -i -O--buildsystem=R fakeroot debian/rules binary-indep dh binary-indep --buildsystem R dh_testroot -i -O--buildsystem=R dh_prep -i -O--buildsystem=R dh_installdirs -i -O--buildsystem=R dh_auto_install -i -O--buildsystem=R I: R Package: cummeRbund Version: 2.16.0 I: Building using R version 3.3.1.20161024-1 I: R API version: r-api-3 I: Using built-time from d/changelog: Thu, 27 Oct 2016 15:53:32 +0200 mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-cummerbund/usr/lib/R/site-library R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-cummerbund/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 27 Oct 2016 15:53:32 +0200'" * installing *source* package 'cummeRbund' ... ** R ** data ** inst ** preparing package for lazy loading Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called 'foreign' Error : package 'Gviz' could not be loaded ERROR: lazy loading failed for package 'cummeRbund' * removing '/<<PKGBUILDDIR>>/debian/r-bioc-cummerbund/usr/lib/R/site-library/cummeRbund' dh_auto_install: R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-cummerbund/usr/lib/R/site-library --clean . --built-timestamp='Thu, 27 Oct 2016 15:53:32 +0200' returned exit code 1 debian/rules:4: recipe for target 'binary-indep' failed make: *** [binary-indep] Error 25 dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit status 2 -------------------------------------------------------------------------------- Seems like a missing build-depends. Thanks.
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--- Begin Message ---Source: r-bioc-cummerbund Source-Version: 2.16.0-2 We believe that the bug you reported is fixed in the latest version of r-bioc-cummerbund, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated r-bioc-cummerbund package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 02 Nov 2016 14:09:24 +0100 Source: r-bioc-cummerbund Binary: r-bioc-cummerbund Architecture: source all Version: 2.16.0-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: r-bioc-cummerbund - tool for analysis of Cufflinks RNA-Seq output Closes: 842914 Changes: r-bioc-cummerbund (2.16.0-2) unstable; urgency=medium . * Build-Depends: r-cran-foreign, r-cran-nnet Closes: #842914 Checksums-Sha1: 9f9c9dc0f787c92c65ddf5614537bb06d4b267ac 2202 r-bioc-cummerbund_2.16.0-2.dsc 23a5d054b7f7cd81a92ac84c7d87e3d44ef7460c 3712 r-bioc-cummerbund_2.16.0-2.debian.tar.xz 20829885ffda686031680c81be57e07a03bb5e25 2127148 r-bioc-cummerbund_2.16.0-2_all.deb Checksums-Sha256: 316f80649a56c4dd96e6aa44c91bf0a17de3ba6d531a1dca002ca4ea2c92d209 2202 r-bioc-cummerbund_2.16.0-2.dsc 2a49f83da72e1daf665ecd924873d6efc307022585c3809c0030b6585df00b74 3712 r-bioc-cummerbund_2.16.0-2.debian.tar.xz d6693482f72d80a1b13bd3be74b6ecc6dd36e84f76ae56f0675befb0726b4fcd 2127148 r-bioc-cummerbund_2.16.0-2_all.deb Files: 2ccbfbe3cfcebb88704e47394a4b8845 2202 gnu-r optional r-bioc-cummerbund_2.16.0-2.dsc 0ff30b5c42fc432f2b51b5aebf122a3e 3712 gnu-r optional r-bioc-cummerbund_2.16.0-2.debian.tar.xz 64f261bd45ed889a99e1ffdc406e0636 2127148 gnu-r optional r-bioc-cummerbund_2.16.0-2_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJYGee+AAoJEFeKBJTRxkbRPSEP/3Er+kDlUEpRwunaw1+hGXyO wHrg9xxDmyxouYNLypBB6a9USK8z/Vk0ztlzruhPVgcpZ9lzr5VxgxT72aOEelJr QeTKcZfpJ7oE4w3AVQNWRbjDliiNerTgllBEHFi6jyg01oAzPs8USqeooSG6XYSQ Q1XEwifwXGz8N5eXxJ5kTqbd5tWK3t2UjRMv7VC8shA0ysPwXSrxbQdeFNK7bjCk oLGWXv/4lMO4K+TPXAyxMNUoH9O7n8BO8sVuSL9ctJbGk2PCOUqmCE43QJ7yBPSv YwHrUyoeX7FefJWchG5d35HSd2555lcC6efD4vipxQpZWKc006l01qQuVCi0PmgP IewCdCMmegrofNrpq/fPf25fPkbki1ZdTplgOsPr/4wtLUTEpuH5pBvI6Nixvz91 SQApkp/fgpB257dOkid2puRBHx5O4ZFb/onRK7bToiVlD+M2P3A7QLK3LLQxWvy0 1TQxznvmTluDcjBrq/Ef2KjS3257KsWE8iuSDd+yHGFKi4a7awMhSTsYRrad3PLy SKaIwqkKiyX770vda/o4c5eIWgbztrPnaV1tq0k222Wg5XDr0panl6VgTmTdMCb9 6oByb0Xf1q5Ev9keqrPfk27YJkuJxwB5rJU1VB8hu9Ii4jp/utdJUWn0Mac3yR1g MiNHw2NF9yLPSC6uyXNq =MCOV -----END PGP SIGNATURE-----
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