Your message dated Wed, 02 Nov 2016 21:18:28 +0000
with message-id <[email protected]>
and subject line Bug#842356: fixed in bio-eagle 2.3-3
has caused the Debian Bug report #842356,
regarding bio-eagle: please make the build reproducible
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
842356: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=842356
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: bio-eagle
Version: 2.3-2
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: fileordering
X-Debbugs-Cc: [email protected]
Hi,
Whilst working on the Reproducible Builds effort [0], we noticed
that bio-eagle could not be built reproducibly.
Whilst you correctly pass --sort=name, the wildcard is already expanded
in a locale-specific manner.
Patch attached.
[0] https://reproducible-builds.org/
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
--- a/debian/bio-eagle-examples.install 2016-10-28 12:48:26.616909155 +0100
--- b/debian/bio-eagle-examples.install 2016-10-28 12:54:35.768261134 +0100
@@ -1,2 +1,2 @@
-example/examples.tar.xz /usr/share/doc/bio-eagle/examples/
+examples.tar.xz /usr/share/doc/bio-eagle/examples/
tables /usr/share/doc/bio-eagle/examples/
--- a/debian/rules 2016-10-28 12:48:26.616909155 +0100
--- b/debian/rules 2016-10-28 13:00:23.707463839 +0100
@@ -6,8 +6,7 @@
dh $@ --sourcedirectory=src
override_dh_install:
- cd $(CURDIR)/example/ && \
- tar Jcvf examples.tar.xz * --sort=name --mode=go=rX,u+rw,a-s
--owner=root --group=root --numeric-owner
+ tar Jcvf examples.tar.xz example --sort=name --mode=go=rX,u+rw,a-s
--owner=root --group=root --numeric-owner
dh_install
override_dh_installchangelogs:
--- End Message ---
--- Begin Message ---
Source: bio-eagle
Source-Version: 2.3-3
We believe that the bug you reported is fixed in the latest version of
bio-eagle, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dylan Aïssi <[email protected]> (supplier of updated bio-eagle package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 30 Oct 2016 23:26:33 +0100
Source: bio-eagle
Binary: bio-eagle bio-eagle-examples
Architecture: source
Version: 2.3-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Dylan Aïssi <[email protected]>
Description:
bio-eagle - Haplotype phasing within a genotyped cohort or using a phased ref
bio-eagle-examples - Examples for bio-eagle
Closes: 842356
Changes:
bio-eagle (2.3-3) unstable; urgency=medium
.
* Remove the test which creates a false positive in the autopkgtest
by emitting some warnings. (Closes: #842356)
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