Your message dated Fri, 04 Nov 2016 09:35:20 +0000
with message-id <[email protected]>
and subject line Bug#843129: fixed in ncbi-vdb 2.8.0+dfsg-1
has caused the Debian Bug report #843129,
regarding ncbi-vdb: Use wildcard instead of $(CPU) in install to fix FTBFS on
i386
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
843129: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=843129
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: ncbi-vdb
Version: 2.7.0+dfsg-4
Severity: normal
Tags: patch
User: [email protected]
Usertags: origin-ubuntu zesty ubuntu-patch
Dear Maintainer,
ncbi-vdb currently fails to build from source on the i386 architecture because
there's a discrepancy in architecture naming.
In Ubuntu, the attached patch was applied to achieve the following:
* debian/rules: Use wildcard instead of $(CPU) in install logic. Fixes FTBFS
on i386.
Thanks for considering the patch.
Logan Rosen
-- System Information:
Debian Release: stretch/sid
APT prefers yakkety-updates
APT policy: (500, 'yakkety-updates'), (500, 'yakkety-security'), (500,
'yakkety')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.4.0-21-generic (SMP w/2 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) (ignored: LC_ALL
set to en_US.utf8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
diff -Nru ncbi-vdb-2.7.0+dfsg/debian/rules ncbi-vdb-2.7.0+dfsg/debian/rules
--- ncbi-vdb-2.7.0+dfsg/debian/rules 2016-09-01 05:49:14.000000000 -0400
+++ ncbi-vdb-2.7.0+dfsg/debian/rules 2016-11-04 01:20:41.000000000 -0400
@@ -58,30 +58,30 @@
--multiarch \
--devunversioned \
--exclude-la \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/lib/libncbi-ngs-c++.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libkapp.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libkapp-norsrc.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libkff.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libktst.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libkxfs.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libkxml.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libload.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libtui.a usr/lib/$(BUILDTYPE) \
- --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/ilib/libtui_cpp.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/lib/libncbi-ngs-c++.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkapp.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkapp-norsrc.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkff.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libktst.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkxfs.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libkxml.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libload.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libtui.a usr/lib/$(BUILDTYPE) \
+ --movedev debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/ilib/libtui_cpp.a usr/lib/$(BUILDTYPE) \
--movedev interfaces usr/include \
- debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/lib/libncbi-vdb.so
+ debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/lib/libncbi-vdb.so
mv debian/libncbi-vdb-dev/usr/include/interfaces debian/libncbi-vdb-dev/usr/include/$(DEBPKGNAME)
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--override s/libhdf5_serial[0-9]*-dev/libhdf5-dev/ \
- debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/lib/libkdf5.so
+ debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/lib/libkdf5.so
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
- debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/$(CPU)/dbg/lib/libncbi-wvdb.so
+ debian/tmp/usr/$(DEBPKGNAME)/$(OS)/gcc/*/dbg/lib/libncbi-wvdb.so
find debian/lib* -name .gitignore -delete
# move schemata from development packages to library packages since these are used in executables
mkdir -p $(SCHEMADIR)
--- End Message ---
--- Begin Message ---
Source: ncbi-vdb
Source-Version: 2.8.0+dfsg-1
We believe that the bug you reported is fixed in the latest version of
ncbi-vdb, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated ncbi-vdb package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 04 Nov 2016 10:15:13 +0100
Source: ncbi-vdb
Binary: libncbi-vdb2 libncbi-vdb-dev libkdf5-2 libkdf5-dev libncbi-wvdb2
libncbi-wvdb-dev
Architecture: source amd64
Version: 2.8.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
libkdf5-2 - hdf5 access to data in the INSDC Sequence Read Archives
libkdf5-dev - hdf5 access to data in the INSDC Sequence Read Archives (devel)
libncbi-vdb-dev - libraries for using data in the INSDC Sequence Read Archives
(dev
libncbi-vdb2 - libraries for using data in the INSDC Sequence Read Archives
libncbi-wvdb-dev - virtual layer update modul of ncbi-vdb library (devel)
libncbi-wvdb2 - virtual layer update modul of ncbi-vdb library
Closes: 843129
Changes:
ncbi-vdb (2.8.0+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Use wildcard instead of $(CPU) in install to fix FTBFS on i386 (thanks
for the patch to Logan Rosen <[email protected]>)
Closes: #843129
* New Build-Depends: libmbedtls-dev
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