Your message dated Sun, 18 Dec 2016 11:20:12 +0000 with message-id <[email protected]> and subject line Bug#848543: fixed in lambda-align 1.0.0-4 has caused the Debian Bug report #848543, regarding src:lambda-align: New version available to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 848543: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=848543 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:lambda-align Severity: normal Hi Sascha, I tried to upgrade lambda-align to latest upstream version in Git. Unfortunately the build failed with: ... /build/lambda-align-1.9.1/src/lambda.cpp:298:36: required from 'int argConv4(LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; TScoreExtension = seqan::Tag<seqan::AffineGaps_>; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1u; seqan::BlastProgram p = (seqan::BlastProgram)4u]' /build/lambda-align-1.9.1/src/lambda.cpp:269:24: required from 'int argConv3(LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&, const TRedAlph&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; TRedAlph = seqan::SimpleType<unsigned char, seqan::ReducedAminoAcid_<seqan::Tag<seqan::Murphy10_> > >; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1u; seqan::BlastProgram p = (seqan::BlastProgram)4u]' /build/lambda-align-1.9.1/src/lambda.cpp:224:28: required from 'int argConv2(LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&, const seqan::BlastProgramSelector<p>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1u; seqan::BlastProgram p = (seqan::BlastProgram)4u]' /build/lambda-align-1.9.1/src/lambda.cpp:194:28: required from 'int argConv1(LambdaOptions&, const TOutFormat&, const seqan::BlastTabularSpecSelector<h>&) [with TOutFormat = seqan::Tag<seqan::BlastTabular_>; seqan::BlastTabularSpec h = (seqan::BlastTabularSpec)1u]' /build/lambda-align-1.9.1/src/lambda.cpp:152:104: required from here /build/lambda-align-1.9.1/src/lambda.hpp:2065:36: error: '_prepareAndRunSimdAlignment' was not declared in this scope /build/lambda-align-1.9.1/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string<char>]': ... Could you please take over? Kind regards Andreas. -- System Information: Debian Release: 8.6 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.16.0-4-amd64 (SMP w/1 CPU core) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system)
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--- Begin Message ---Source: lambda-align Source-Version: 1.0.0-4 We believe that the bug you reported is fixed in the latest version of lambda-align, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated lambda-align package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sun, 18 Dec 2016 09:21:15 +0100 Source: lambda-align Binary: lambda-align Architecture: source Version: 1.0.0-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: lambda-align - Local Aligner for Massive Biological DatA Closes: 848543 Changes: lambda-align (1.0.0-4) unstable; urgency=medium . * Team upload. * d/watch: - no recompression since no change in upstream tarball is needed - exclude 1.9 pre-releases Closes: #848543 * debhelper 10 * Remove extra license files in d/rules rather than in a patch Checksums-Sha1: 152115fb3b65f67b2a60e8f563d16d8216cea5d9 2059 lambda-align_1.0.0-4.dsc a701661a4c98e92cf9246fcc51000199f7bdaf3e 4704 lambda-align_1.0.0-4.debian.tar.xz Checksums-Sha256: dad19ed1b760b7371f56a852d7aa2234ca0d44883d3abcdb33b8b9d0cb246015 2059 lambda-align_1.0.0-4.dsc ab37d887d1a7798c6bb1cd982a2bdec1d31245e88d7e766c4c51206ebc63c5e2 4704 lambda-align_1.0.0-4.debian.tar.xz Files: 220b4aeba80e6f9a5a766e7cbd82d46b 2059 science optional lambda-align_1.0.0-4.dsc 3c24847c593d2ec95be8a68ce78469fd 4704 science optional lambda-align_1.0.0-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlhWaMYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEZ3w/+LToV9S9R227ma+TizQB84AbjFICpw5tm QaaTe2WwXZpUo1jimep7qZ7O4sTeCa27sX0jszT9cmnKwaLCa/TugHneNPJWWYEI sxCFDUCdDSJyrJWNED9GZ3AkHHVFRoHOBjTQMazsaQDl4e1cNSx9Hy/pQ9LirGkX dqnqG4uoTrRQ6Ah9ZB5mo7/J5rLPlbFF8gbMcv4SIS13Q0RISe/rY11+48Emw78l rEZM8dar94yjehAnp7Lgh5VGV9hs4YIBn/xv6yNnLI5un6DcccuiTp3UmdYctcOd bOGJeZVPiNTo8vz8Ki/Gr2TXRy2l2n4PyslKh1grF6EallSXNlzCbgX7Kh0/Bclh m+/GFsX4roGsJiQ0c/7lAcRQSwDRnKzrmAznRlJ/ioPsmMAEyBIIlIKit2y9wh0C y2g3vkFMrMMY00GvV4OsE8XSSIO2Iqm2bwYoXDe7taQhCGm9KI1aCn3ouMgGkkwL DetnZbD7DJdrUsRVuQMarzD5gBPxf8h8phb8ed9CtZRdU8h9osysfvc6I20XhwdX BCZkFt8S9QJbKK0gLnBSv+t5bGTVk2OKSZv8J/WxIr+ZNAjMVu5bBX4nXa0XjTtj OEY3Znf77fOMdn7yIco8rwUvBXw3ZGPOJOT/sApPFIhHgMyjiqlArz+8/OAkGCjD tzw/ttDXbJ0= =Cojl -----END PGP SIGNATURE-----
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