Your message dated Tue, 20 Dec 2016 18:03:33 +0000
with message-id <[email protected]>
and subject line Bug#848747: fixed in syrthes 4.3.0-dfsg1-2
has caused the Debian Bug report #848747,
regarding syrthes: FTBFS: H5public.h:61:20: fatal error: mpi.h: No such file or
directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
848747: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=848747
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: syrthes
Version: 4.3.0-dfsg1-1
Severity: serious
Tags: stretch sid
User: [email protected]
Usertags: qa-ftbfs-20161219 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> gcc -c -D _FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -D_SYRTHES_MPI_
> -DMED -I /usr/lib/openmpi/include -I/usr/include
> -I/usr/lib/x86_64-linux-gnu/hdf5/openmpi/include convert2syrthes4.c -o
> ../../../../build//convert2syrthes4.o
> lecture_sim.c: In function 'lecture_tableau_sim_entier':
> lecture_sim.c:186:22: warning: format '%d' expects argument of type 'int',
> but argument 3 has type 'long int' [-Wformat=]
> printf("_tab[%d] = %d\n",j,_tab[j]);
> ^
> lecture_sim.c:188:11: warning: format '%d' expects argument of type 'int',
> but argument 2 has type 'long int' [-Wformat=]
> printf("%d != %d\n",_tab[0],l_seg);
> ^
> lecture_sim.c:195:24: warning: format '%d' expects argument of type 'int',
> but argument 3 has type 'long int' [-Wformat=]
> printf("_tab[%d+1] = %d\n",j,_tab[j+1]);
> ^
> lecture_sim.c:202:22: warning: format '%d' expects argument of type 'int',
> but argument 3 has type 'long int' [-Wformat=]
> printf("_tab[%d] = %d\n",i,_tab[0]);
> ^
> lecture_sim.c: In function 'lire_sim':
> lecture_sim.c:391:32: warning: format '%d' expects argument of type 'int',
> but argument 2 has type 'long int' [-Wformat=]
> printf("m[ 30] NIVEAU = %d\n", m[29]);
> ^
> lecture_sim.c:392:32: warning: format '%d' expects argument of type 'int',
> but argument 2 has type 'long int' [-Wformat=]
> printf("m[ 31] ETAT = %d\n", m[30]);
> ^
> lecture_sim.c:393:32: warning: format '%d' expects argument of type 'int',
> but argument 2 has type 'long int' [-Wformat=]
> printf("m[ 32] NTACM = %d\n", m[31]);
> ^
> In file included from
> /usr/lib/x86_64-linux-gnu/hdf5/openmpi/include/hdf5.h:24:0,
> from /usr/include/med.h:22,
> from lecture_med.c:44:
> /usr/include/hdf5/openmpi/H5public.h:61:20: fatal error: mpi.h: No such file
> or directory
> # include <mpi.h>
> ^
> compilation terminated.
> lecture_sim.c:699:2: warning: implicit declaration of function 'extrbord2'
> [-Wimplicit-function-declaration]
> extrbord2(*maillnodes,maillnodebord,nrefac);
> ^~~~~~~~~
> lecture_sim.c:701:2: warning: implicit declaration of function 'extrbord3'
> [-Wimplicit-function-declaration]
> extrbord3(*maillnodes,maillnodebord,nrefac);
> ^~~~~~~~~
> convert2syrthes4.c: In function 'main':
> convert2syrthes4.c:191:9: warning: implicit declaration of function
> 'ouvrir_syr' [-Wimplicit-function-declaration]
> if (ouvrir_syr(&maillage,nom_syr) != 0) return 1;
> ^~~~~~~~~~
> convert2syrthes4.c:197:16: warning: implicit declaration of function
> 'conversion_neu' [-Wimplicit-function-declaration]
> case 1 : if (conversion_neu(&maillage,iargv[m+1]) != 0) return 1; break;
> ^~~~~~~~~~~~~~
> convert2syrthes4.c:198:16: warning: implicit declaration of function
> 'conversion_msh' [-Wimplicit-function-declaration]
> case 2 : if (conversion_msh(&maillage,iargv[m+1]) != 0) return 1; break;
> ^~~~~~~~~~~~~~
> convert2syrthes4.c:200:16: warning: implicit declaration of function
> 'conversion_med' [-Wimplicit-function-declaration]
> case 3 : if (conversion_med(&maillage,iargv[m+1], nom_syr) != 0) return 1;
> break;
> ^~~~~~~~~~~~~~
> convert2syrthes4.c:202:16: warning: implicit declaration of function
> 'conversion_sim' [-Wimplicit-function-declaration]
> case 4 : if
> (conversion_sim(&maillage,&maillnodes,&maillnodebord,iargv[m+1], nom_syr) !=
> 0) return 1; break;
> ^~~~~~~~~~~~~~
> convert2syrthes4.c:203:16: warning: implicit declaration of function
> 'conversion_ide' [-Wimplicit-function-declaration]
> case 5 : if (conversion_ide(&maillage,iargv[m+1], nom_syr) != 0) return 1;
> break;
> ^~~~~~~~~~~~~~
> convert2syrthes4.c:216:7: warning: implicit declaration of function
> 'fermer_syr' [-Wimplicit-function-declaration]
> if (fermer_syr(&maillage) != 0) return 1;
> ^~~~~~~~~~
> convert2syrthes4.c:219:7: warning: implicit declaration of function
> 'reouvrir_syr' [-Wimplicit-function-declaration]
> if (reouvrir_syr(&maillage, nom_syr) != 0) return 1;
> ^~~~~~~~~~~~
> convert2syrthes4.c:223:7: warning: implicit declaration of function
> 'ecrire_entete_syr' [-Wimplicit-function-declaration]
> if (ecrire_entete_syr(&maillage) != 0) return 1;
> ^~~~~~~~~~~~~~~~~
> convert2syrthes4.c:228:9: warning: implicit declaration of function
> 'ouvrir_neu' [-Wimplicit-function-declaration]
> if (ouvrir_neu(&maillage,iargv[m+1]) != 0) return 1;
> ^~~~~~~~~~
> convert2syrthes4.c:229:9: warning: implicit declaration of function
> 'modif_noeuds_neusyr' [-Wimplicit-function-declaration]
> if (modif_noeuds_neusyr(&maillage) != 0) return 1;
> ^~~~~~~~~~~~~~~~~~~
> convert2syrthes4.c:230:9: warning: implicit declaration of function
> 'fermer_neu' [-Wimplicit-function-declaration]
> if (fermer_neu(&maillage) != 0) return 1;
> ^~~~~~~~~~
> convert2syrthes4.c:234:9: warning: implicit declaration of function
> 'ouvrir_msh' [-Wimplicit-function-declaration]
> if (ouvrir_msh(&maillage,iargv[m+1]) != 0) return 1;
> ^~~~~~~~~~
> convert2syrthes4.c:235:9: warning: implicit declaration of function
> 'modif_noeuds_mshsyr' [-Wimplicit-function-declaration]
> if (modif_noeuds_mshsyr(&maillage) != 0) return 1;
> ^~~~~~~~~~~~~~~~~~~
> convert2syrthes4.c:236:9: warning: implicit declaration of function
> 'fermer_msh' [-Wimplicit-function-declaration]
> if (fermer_msh(&maillage) != 0) return 1;
> ^~~~~~~~~~
> convert2syrthes4.c: In function 'conversion_sim':
> convert2syrthes4.c:257:7: warning: implicit declaration of function
> 'ouvrir_sim' [-Wimplicit-function-declaration]
> if (ouvrir_sim(maillage, nomfich) != 0) return 1;
> ^~~~~~~~~~
> convert2syrthes4.c:258:7: warning: implicit declaration of function
> 'lire_sim' [-Wimplicit-function-declaration]
> if (lire_sim(maillage,maillnodes,maillnodebord) != 0) return 1;
> ^~~~~~~~
> convert2syrthes4.c:260:7: warning: implicit declaration of function
> 'ecrire_coord_syr' [-Wimplicit-function-declaration]
> if (ecrire_coord_syr(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~~~
> convert2syrthes4.c:261:7: warning: implicit declaration of function
> 'ecrire_elem_syr' [-Wimplicit-function-declaration]
> if (ecrire_elem_syr(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~~
> convert2syrthes4.c:264:8: warning: implicit declaration of function
> 'ecrire_elem_de_bord_syr' [-Wimplicit-function-declaration]
> if(ecrire_elem_de_bord_syr(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~~~~~~~~~~
> convert2syrthes4.c:266:7: warning: implicit declaration of function
> 'fermer_sim' [-Wimplicit-function-declaration]
> if (fermer_sim(maillage) != 0) return 1;
> ^~~~~~~~~~
> convert2syrthes4.c: In function 'conversion_ide':
> convert2syrthes4.c:276:7: warning: implicit declaration of function
> 'ouvrir_ide' [-Wimplicit-function-declaration]
> if (ouvrir_ide(maillage, nomfich) != 0) return 1;
> ^~~~~~~~~~
> convert2syrthes4.c:277:7: warning: implicit declaration of function
> 'lire_ideas' [-Wimplicit-function-declaration]
> if (lire_ideas(maillage) != 0) return 1;
> ^~~~~~~~~~
> convert2syrthes4.c:285:7: warning: implicit declaration of function
> 'fermer_ide' [-Wimplicit-function-declaration]
> if (fermer_ide(maillage) != 0) return 1;
> ^~~~~~~~~~
> convert2syrthes4.c: In function 'conversion_neu':
> convert2syrthes4.c:296:8: warning: implicit declaration of function
> 'lire_entete_neu' [-Wimplicit-function-declaration]
> if (lire_entete_neu(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~~
> convert2syrthes4.c:298:8: warning: implicit declaration of function
> 'lire_coord_neu' [-Wimplicit-function-declaration]
> if (lire_coord_neu(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~
> convert2syrthes4.c:299:8: warning: implicit declaration of function
> 'lire_noeuds_colores_neu' [-Wimplicit-function-declaration]
> if (lire_noeuds_colores_neu(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~~~~~~~~~~
> convert2syrthes4.c:301:8: warning: implicit declaration of function
> 'lire_elem_neu' [-Wimplicit-function-declaration]
> if (lire_elem_neu(maillage) != 0) return 1;
> ^~~~~~~~~~~~~
> convert2syrthes4.c:302:8: warning: implicit declaration of function
> 'lire_zones_neu' [-Wimplicit-function-declaration]
> if (lire_zones_neu(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~
> convert2syrthes4.c:304:8: warning: implicit declaration of function
> 'lire_cl_neu' [-Wimplicit-function-declaration]
> if (lire_cl_neu(maillage) != 0) return 1;
> ^~~~~~~~~~~
> convert2syrthes4.c: In function 'conversion_msh':
> convert2syrthes4.c:323:8: warning: implicit declaration of function
> 'lire_entete_msh' [-Wimplicit-function-declaration]
> if (lire_entete_msh(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~~
> convert2syrthes4.c:325:8: warning: implicit declaration of function
> 'lire_coord_msh' [-Wimplicit-function-declaration]
> if (lire_coord_msh(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~
> convert2syrthes4.c:326:8: warning: implicit declaration of function
> 'lire_noeuds_colores_msh' [-Wimplicit-function-declaration]
> if (lire_noeuds_colores_msh(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~~~~~~~~~~
> convert2syrthes4.c:328:8: warning: implicit declaration of function
> 'lire_elem_msh' [-Wimplicit-function-declaration]
> if (lire_elem_msh(maillage) != 0) return 1;
> ^~~~~~~~~~~~~
> convert2syrthes4.c:329:8: warning: implicit declaration of function
> 'lire_zones_msh' [-Wimplicit-function-declaration]
> if (lire_zones_msh(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~
> convert2syrthes4.c:331:8: warning: implicit declaration of function
> 'lire_cl_msh' [-Wimplicit-function-declaration]
> if (lire_cl_msh(maillage) != 0) return 1;
> ^~~~~~~~~~~
> convert2syrthes4.c: In function 'conversion_med':
> convert2syrthes4.c:348:7: warning: implicit declaration of function
> 'ouvrir_med' [-Wimplicit-function-declaration]
> if (ouvrir_med(maillage, nomfich, nomsyr) != 0) return 1;
> ^~~~~~~~~~
> convert2syrthes4.c:349:7: warning: implicit declaration of function
> 'lire_entete_med' [-Wimplicit-function-declaration]
> if (lire_entete_med(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~~
> convert2syrthes4.c:351:7: warning: implicit declaration of function
> 'lire_coord_med' [-Wimplicit-function-declaration]
> if (lire_coord_med(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~
> convert2syrthes4.c:352:7: warning: implicit declaration of function
> 'lire_noeuds_colores_med' [-Wimplicit-function-declaration]
> if (lire_noeuds_colores_med(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~~~~~~~~~~
> convert2syrthes4.c:354:7: warning: implicit declaration of function
> 'lire_elem_med' [-Wimplicit-function-declaration]
> if (lire_elem_med(maillage) != 0) return 1;
> ^~~~~~~~~~~~~
> convert2syrthes4.c:355:7: warning: implicit declaration of function
> 'lire_zones_med' [-Wimplicit-function-declaration]
> if (lire_zones_med(maillage) != 0) return 1;
> ^~~~~~~~~~~~~~
> convert2syrthes4.c:357:7: warning: implicit declaration of function
> 'lire_cl_med' [-Wimplicit-function-declaration]
> if (lire_cl_med(maillage) != 0) return 1;
> ^~~~~~~~~~~
> convert2syrthes4.c:358:7: warning: implicit declaration of function
> 'ecrire_correspondance_syr_med' [-Wimplicit-function-declaration]
> if (ecrire_correspondance_syr_med(maillage) !=0 ) return 1;
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> convert2syrthes4.c:363:7: warning: implicit declaration of function
> 'fermer_med' [-Wimplicit-function-declaration]
> if (fermer_med(maillage) != 0) return 1;
> ^~~~~~~~~~
> Makefile:28: recipe for target '../../../../build//lecture_med.o' failed
> make[3]: *** [../../../../build//lecture_med.o] Error 1
The full build log is available from:
http://aws-logs.debian.net/2016/12/19/syrthes_4.3.0-dfsg1-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: syrthes
Source-Version: 4.3.0-dfsg1-2
We believe that the bug you reported is fixed in the latest version of
syrthes, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gilles Filippini <[email protected]> (supplier of updated syrthes package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 20 Dec 2016 18:29:18 +0100
Source: syrthes
Binary: syrthes syrthes-tools syrthes-gui syrthes-tests
Architecture: source
Version: 4.3.0-dfsg1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Gilles Filippini <[email protected]>
Description:
syrthes - Transient thermal simulations in complex solid geometries
syrthes-gui - Transient thermal simulations in complex solid geometries - GUI
syrthes-tests - Test cases for SYRTHES
syrthes-tools - Transient thermal simulations in complex solid geometries -
tools
Closes: 848747
Changes:
syrthes (4.3.0-dfsg1-2) unstable; urgency=medium
.
* Update patch setup.patch after openmpi went mutiarch (closes:
#848747)
Checksums-Sha1:
5bbabeb31a1b9456ad87c29fd8a3da6ade656e21 2014 syrthes_4.3.0-dfsg1-2.dsc
27e741246b9cd97ddefb204f36579d5a3e7916b0 12824
syrthes_4.3.0-dfsg1-2.debian.tar.xz
Checksums-Sha256:
e0e4aba2b25ac0efbbad3c5fc8e6b18a67b6f7cdcfb0183e07e7aefe5402626e 2014
syrthes_4.3.0-dfsg1-2.dsc
e087bb8e2a1ff5fefe3bd8a29ecc2737718a4a7c82f221845bcbb5495e513de0 12824
syrthes_4.3.0-dfsg1-2.debian.tar.xz
Files:
90c9af04a44f0644d18f4d0ee59905a1 2014 science extra syrthes_4.3.0-dfsg1-2.dsc
5aa0031d5362410ac4d9dad8e27abed7 12824 science extra
syrthes_4.3.0-dfsg1-2.debian.tar.xz
-----BEGIN PGP SIGNATURE-----
iQFEBAEBCAAuFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAlhZbjQQHHBpbmlAZGVi
aWFuLm9yZwAKCRDv6Gxsf/7Pg0dNCACe7YTI5BIu8+A4T0Ik0T4to/mu6tVZ758M
OPasuNEIevVC1RbDpHTlr8u2EukWsbgCSgb9dmjTGG1gs/qDZBzOs+kaE+kOa0Fp
kGTg8GOmAviVJtgLrkzhTZyW6qDyeKDH2s0TCx0rCOLD/+Rde3S2i+T5J7Qy6YQt
XtS0WxiC828sVMGt09y9pwLqRsGCxQwMI3lt7SS82+k90f0UzZW5bXtd4SjQRh5k
CUOR+VGgHPkQN+d1Uw2gXvATtqcw5/IoGpohExS8qt6bu/eBBirZmc5O5KBqvy2M
sB66K4q1YpamloE7Pgf8s7eZMQX+uKzTM5TZsiW5y9atv1ZafoYC
=LPMW
-----END PGP SIGNATURE-----
--- End Message ---
