Your message dated Tue, 10 Jan 2017 04:20:41 +0000 with message-id <[email protected]> and subject line Bug#850671: Removed package(s) from unstable has caused the Debian Bug report #849929, regarding biojava3-live: FTBFS (error: cannot find symbol) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 849929: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=849929 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:biojava3-live Version: 3.1.0+dfsg-2 Severity: serious Dear maintainer: I tried to build this package in stretch with "dpkg-buildpackage -A" (which is what the "Arch: all" autobuilder would do to build it) but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-indep dh build-indep --with javahelper dh: Compatibility levels before 9 are deprecated (level 8 in use) dh_testdir -i dh_update_autotools_config -i debian/rules override_dh_auto_configure make[1]: Entering directory '/<<BUILDDIR>>/biojava3-live-3.1.0+dfsg' dh_auto_configure dh_auto_configure: Compatibility levels before 9 are deprecated (level 8 in use) sed -e 's/BJLIB/biojava3-forester/g' debian/build.xml > biojava3-forester/build.xml sed -e 's/BJLIB/biojava3-aa-prop/g' debian/build.xml > biojava3-aa-prop/build.xml sed -e 's/BJLIB/biojava3-core/g' debian/build.xml > biojava3-core/build.xml sed -e 's/BJLIB/biojava3-alignment/g' debian/build.xml > biojava3-alignment/build.xml [... snipped ...] [javac] location: class AsaCalculator [javac] /<<BUILDDIR>>/biojava3-live-3.1.0+dfsg/biojava3-structure/src/main/java/org/biojava/bio/structure/asa/AsaCalculator.java:256: error: cannot find symbol [javac] Point3d[] points = new Point3d[nSpherePoints]; [javac] ^ [javac] symbol: class Point3d [javac] location: class AsaCalculator [javac] /<<BUILDDIR>>/biojava3-live-3.1.0+dfsg/biojava3-structure/src/main/java/org/biojava/bio/structure/asa/AsaCalculator.java:263: error: cannot find symbol [javac] points[k] = new Point3d(Math.cos(phi)*r, y, Math.sin(phi)*r); [javac] ^ [javac] symbol: class Point3d [javac] location: class AsaCalculator [javac] /<<BUILDDIR>>/biojava3-live-3.1.0+dfsg/biojava3-structure/src/main/java/org/biojava/bio/structure/asa/AsaCalculator.java:307: error: cannot find symbol [javac] for (Point3d point: spherePoints){ [javac] ^ [javac] symbol: class Point3d [javac] location: class AsaCalculator [javac] /<<BUILDDIR>>/biojava3-live-3.1.0+dfsg/biojava3-structure/src/main/java/org/biojava/bio/structure/asa/AsaCalculator.java:309: error: cannot find symbol [javac] Point3d test_point = new Point3d(point.x*radius + atom_i.getX(), [javac] ^ [javac] symbol: class Point3d [javac] location: class AsaCalculator [javac] /<<BUILDDIR>>/biojava3-live-3.1.0+dfsg/biojava3-structure/src/main/java/org/biojava/bio/structure/asa/AsaCalculator.java:309: error: cannot find symbol [javac] Point3d test_point = new Point3d(point.x*radius + atom_i.getX(), [javac] ^ [javac] symbol: class Point3d [javac] location: class AsaCalculator [javac] /<<BUILDDIR>>/biojava3-live-3.1.0+dfsg/biojava3-structure/src/main/java/org/biojava/bio/structure/asa/AsaCalculator.java:327: error: cannot find symbol [javac] double diff_sq = test_point.distanceSquared(new Point3d(atom_j.getCoords())); [javac] ^ [javac] symbol: class Point3d [javac] location: class AsaCalculator [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 10 errors BUILD FAILED /<<BUILDDIR>>/biojava3-live-3.1.0+dfsg/biojava3-structure/build.xml:72: Compile failed; see the compiler error output for details. Total time: 10 seconds debian/rules:28: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 1 make[1]: Leaving directory '/<<BUILDDIR>>/biojava3-live-3.1.0+dfsg' debian/rules:10: recipe for target 'build-indep' failed make: *** [build-indep] Error 2 dpkg-buildpackage: error: debian/rules build-indep gave error exit status 2 -------------------------------------------------------------------------------- The relevant part of the build log is included above. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the page for this package. If you could not reproduce this using sbuild on a single CPU virtual machine (as I did), please do not downgrade or mark as unreproducible, I would then consider giving you access to a virtual machine on which I can reproduce it so that you can as well. (In such case, please contact me off-list for details). Thanks.
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--- Begin Message ---Version: 3.1.0+dfsg-2+rm Dear submitter, as the package biojava3-live has just been removed from the Debian archive unstable we hereby close the associated bug reports. We are sorry that we couldn't deal with your issue properly. For details on the removal, please see https://bugs.debian.org/850671 The version of this package that was in Debian prior to this removal can still be found using http://snapshot.debian.org/. This message was generated automatically; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]. Debian distribution maintenance software pp. Scott Kitterman (the ftpmaster behind the curtain)
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