Your message dated Sat, 01 Apr 2017 21:33:55 +0000
with message-id <[email protected]>
and subject line Bug#859261: fixed in sra-sdk 2.8.1-2+dfsg-2
has caused the Debian Bug report #859261,
regarding sra-sdk: FTBFS: unable to link libngs-sdk-dev and libncbi-vdb-dev
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
859261: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=859261
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: sra-sdk
Version: 2.7.0-1
Tags: patch
Hi Maintainer
Similar to #859257 in libngs-sdk-dev and #859260 in libncbi-vdb-dev,
src:sra-sdk FTBFS on i386 because it is unable to link objects shipped
in these packages.
The attached patch uses DEB_HOST_MULTIARCH instead of
DEB_BUILD_GNU_TYPE to fix the linking.
Regards
Graham
--- a/debian/rules
+++ b/debian/rules
@@ -9,7 +9,7 @@
dh $@
OUTDIR=$(CURDIR)/debian/tmp
-BUILDTYPE := $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+MULTIARCH := $(shell dpkg-architecture -qDEB_HOST_MULTIARCH)
override_dh_auto_clean:
@@ -23,14 +23,14 @@
override_dh_auto_configure:
# output dir will be checked so create it before
mkdir -p debian/tmp/usr/lib
- ln -s /usr/lib/$(BUILDTYPE) debian/tmp/usr/lib
+ ln -s /usr/lib/$(MULTIARCH) debian/tmp/usr/lib
#
# that's no standard configure script lacking support of default
options
#
# --with-debug sets some options that require header files like
compiler.h which
# is internal to ncbi-vcb and not installed into the package - so this
option
# should not be used.
- ./configure --build=$(BUILDTYPE) --prefix=$(CURDIR)/debian/tmp/usr
--build-prefix=$(CURDIR)/debian/tmp/usr --with-ngs-sdk-prefix=/usr
+ ./configure --build=$(MULTIARCH) --prefix=$(CURDIR)/debian/tmp/usr
--build-prefix=$(CURDIR)/debian/tmp/usr --with-ngs-sdk-prefix=/usr
override_dh_auto_build:
export LD_LIBRARY_PATH="$$LD_LIBRARY_PATH:$(OUTDIR)/lib"; export
OUTDIR=$(OUTDIR) ; make DEB_CFLAGS="$(CFLAGS)" DEB_LDFLAGS="$(LDFLAGS)"
--- End Message ---
--- Begin Message ---
Source: sra-sdk
Source-Version: 2.8.1-2+dfsg-2
We believe that the bug you reported is fixed in the latest version of
sra-sdk, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated sra-sdk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 01 Apr 2017 23:06:00 +0200
Source: sra-sdk
Binary: sra-toolkit
Architecture: source
Version: 2.8.1-2+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
sra-toolkit - utilities for the NCBI Sequence Read Archive
Closes: 859261
Changes:
sra-sdk (2.8.1-2+dfsg-2) unstable; urgency=medium
.
* Fix install dir by using DEB_HOST_MULTIARCH instead of DEB_BUILD_GNU_TYPE
(thanks for the patch to Graham Inggs <[email protected]>)
Closes: #859261
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