Your message dated Sun, 14 May 2017 12:20:51 +0200 (CEST) with message-id <[email protected]> and subject line Re: [Debian-med-packaging] Bug#836230: genometools: FTBFS in testing (a2x: ERROR: "xsltproc" returned non-zero exit status 6) has caused the Debian Bug report #836230, regarding FTBFS in a low memory machine with poor error message to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 836230: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836230 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:genometools Version: 1.5.9+ds-2 Severity: serious Dear maintainer: I tried to build this package in stretch with "dpkg-buildpackage -A" (which is what the "Arch: all" autobuilder would do to build it) but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-indep dh build-indep --with python2 dh_testdir -i dh_update_autotools_config -i dh_auto_configure -i debian/rules override_dh_auto_build make[1]: Entering directory '/<<BUILDDIR>>/genometools-1.5.9+ds' faketime -f "`TZ=UTC date -d @1469271266 +'%Y-%m-%d %H:%M:%S'`" dh_auto_build -- useshared=yes x32=no 64bit=yes errorcheck=no all docs manuals make -j1 useshared=yes x32=no 64bit=yes errorcheck=no all docs manuals make[2]: Entering directory '/<<BUILDDIR>>/genometools-1.5.9+ds' [create obj/gt_config.h] [compile alphabet.o] [compile array.o] [... snipped ...] cp -r gtdata /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/bin test -d /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/core \ || mkdir -p /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/core cp src/core/*_api.h /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/core test -d /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/extended \ || mkdir -p /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/extended cp src/extended/*_api.h /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/extended test -d /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/annotationsketch \ || mkdir -p /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/annotationsketch cp src/annotationsketch/*_api.h \ /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/annotationsketch test -d /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/ltr \ || mkdir -p /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/ltr cp src/ltr/*_api.h /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools/ltr cp obj/gt_config.h /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools cp src/genometools.h /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include/genometools test -d /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib || mkdir -p /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib cp lib/libgenometools.a /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib cp lib/libgenometools.so.0 /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib ln -fs /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib/libgenometools.so.0 /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib/libgenometools.so [build config script install] sed -e 's!@CC@!cc!' -e 's!@CFLAGS@!-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/genometools-1.5.9+ds=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security!' \ -e 's!@CPPFLAGS@!-I\\"/<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/include\\" -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DHAVE_SQLITE!' \ -e 's!@CXX@!g++!' -e 's!@CXXFLAGS@!-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/genometools-1.5.9+ds=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security!' \ -e 's!@LDFLAGS@!-L/<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/lib -fPIE -pie -Wl,-z,relro -Wl,-z,now -L/usr/local/lib!' \ -e 's!@LIBS@! -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lcairo -lsqlite3!' -e "s!@VERSION@!`cat VERSION`!" \ -e 's!@BUILDSTAMP@!"2016-08-31 16:47:11"!' \ -e 's!@SYSTEM@!Linux!' <src/genometools-config.in \ >/<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/bin/genometools-config chmod 755 /<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr/bin/genometools-config bin/gt -createman /tmp/gtmanpages warning: skipping tool 'mgth' in iterator (not a GtTool object) warning: skipping tool 'mkfmindex' in iterator (not a GtTool object) warning: skipping tool 'suffixerator' in iterator (not a GtTool object) warning: skipping tool 'chkintegrity' in iterator (not a GtTool object) warning: skipping tool 'chksearch' in iterator (not a GtTool object) warning: skipping tool 'mkctxmap' in iterator (not a GtTool object) warning: skipping tool 'mkindex' in iterator (not a GtTool object) warning: skipping tool 'trsuftab' in iterator (not a GtTool object) test -d /<<BUILDDIR>>/genometools-1.5.9+ds/doc/manpages || mkdir -p /<<BUILDDIR>>/genometools-1.5.9+ds/doc/manpages rm -f /<<BUILDDIR>>/genometools-1.5.9+ds/doc/manpages/* scripts/create_manpages /tmp/gtmanpages /<<BUILDDIR>>/genometools-1.5.9+ds/doc/manpages .a2x: WARNING: --destination-dir option is only applicable to HTML based outputs a2x: ERROR: "xsltproc" --stringparam callout.graphics 0 --stringparam navig.graphics 0 --stringparam admon.textlabel 1 --stringparam admon.graphics 0 "/etc/asciidoc/docbook-xsl/manpage.xsl" "/<<BUILDDIR>>/genometools-1.5.9+ds/doc/manpages/gt.xml" returned non-zero exit status 6 Makefile:948: recipe for target 'manpages' failed make[2]: *** [manpages] Error 1 make[2]: Leaving directory '/<<BUILDDIR>>/genometools-1.5.9+ds' dh_auto_install: make -j1 install DESTDIR=/<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp AM_UPDATE_INFO_DIR=no installmanpages useshared=yes x32=no 64bit=yes errorcheck=no prefix=/<<BUILDDIR>>/genometools-1.5.9+ds/debian/tmp/usr returned exit code 2 debian/rules:63: recipe for target 'override_dh_auto_install' failed make[1]: *** [override_dh_auto_install] Error 2 make[1]: Leaving directory '/<<BUILDDIR>>/genometools-1.5.9+ds' debian/rules:32: recipe for target 'binary-indep' failed make: *** [binary-indep] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit status 2 -------------------------------------------------------------------------------- This used to work in the past, so I would look for build-dependencies which may have changed their behaviour recently. Thanks.
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--- Begin Message ---Version: 1.5.9+ds-4 Hi. I can't reproduce this anymore. I'm not sure if it's because of recent changes that you may have made in the package, because of changes in the build-dependencies, or maybe because I'm no longer using machines with 768 MB of RAM (they were the smallest size from Vultr). In either case, it does not make sense to keep this open, so I'm marking it as fixed in the current version. Thanks.
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