Your message dated Sat, 24 Jun 2017 07:20:19 +0000 with message-id <[email protected]> and subject line Bug#865668: fixed in stacks 1.46-1 has caused the Debian Bug report #865668, regarding stacks shouldn't disable PIE to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 865668: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=865668 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: stacks Version: 1.44-2 Severity: normal Tags: patch With gcc in stretch defaulting to PIE, hardening=+all,-pie changed semantics from "enable hardening but not PIE" to "enable all hardening and explicitely disable the default PIE". The latter is usually not intended. The -pie in hardening flags was in some cases required in pre-stretch releases to avoid build failures caused by (incorrectly) passing -fPIE to the compiler when building shared libraries or plugins. This problem does no longer exist. Please consider applying the following patch: --- debian/rules.old 2017-06-23 15:48:04.000000000 +0000 +++ debian/rules 2017-06-23 15:48:10.000000000 +0000 @@ -5,8 +5,7 @@ pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p') -# export DEB_BUILD_MAINT_OPTIONS = hardening=+all -export DEB_BUILD_MAINT_OPTIONS = hardening=+all,-pie +export DEB_BUILD_MAINT_OPTIONS = hardening=+all %: dh $@ --with python2
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--- Begin Message ---Source: stacks Source-Version: 1.46-1 We believe that the bug you reported is fixed in the latest version of stacks, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated stacks package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 24 Jun 2017 08:20:24 +0200 Source: stacks Binary: stacks stacks-web Architecture: source Version: 1.46-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: stacks - pipeline for building loci from short-read DNA sequences stacks-web - web interface for displaying loci from short-read sequences Closes: 865668 Changes: stacks (1.46-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.0.0 (no changes needed) * do not disable PIE Closes: #865668 * d/rules: use DEB_SOURCE Checksums-Sha1: a586d840a194976d295084eb6b3982f3419b8eee 2082 stacks_1.46-1.dsc 924237cce40792347b938d3b40ed690336dafb3e 907095 stacks_1.46.orig.tar.gz 8690819ac5e0207fae4b83385af4cdc5e547cf49 8780 stacks_1.46-1.debian.tar.xz d91e98f0df80d2736beb917c34807d66f047ded3 13378 stacks_1.46-1_source.buildinfo Checksums-Sha256: c55ec693b96c5b1b71cc731e0c15f8059996b29969228d159c1242f6314adee7 2082 stacks_1.46-1.dsc 45a0725483dc0c0856ad6b1f918e65d91c1f0fe7d8bf209f76b93f85c29ea28a 907095 stacks_1.46.orig.tar.gz 0dd5f83621873ae7a8e8b6649f78f84237581225e75633dd1ee32f0703599ffc 8780 stacks_1.46-1.debian.tar.xz d1195acd9d583cdd4667ca72af2d5951e9e433f773548dfa8220ccd899a305fe 13378 stacks_1.46-1_source.buildinfo Files: e1f88913b663105ad526b083ec0f12d1 2082 science optional stacks_1.46-1.dsc 18b0568a4bba44fb4e5be0eb7ee2c08d 907095 science optional stacks_1.46.orig.tar.gz c06a8c2758f75c74d3ea29baf25eb19d 8780 science optional stacks_1.46-1.debian.tar.xz 836a96fb4d99d910c3d2e7e327739ae4 13378 science optional stacks_1.46-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAllODloRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEBuRAAkxhHCJJddvZeqn2b9b3jfRukmR2AnfYD vtJ83DOOlYW910fNAWkuVl7eT2p0tHnYSW6TUVnOyuFgBofdjd31jhBCwMBC1Jcb pSsvZlzHzhJbpbDgWpbvpsbiipWhYVF0qc6RQSNHm3X2ZxIeSohgZYj/e5PuvH6F Y3SgYohGhLbJ8/boJDF5ke6aKTMxtjQGkqOoIeCFB5p2SPifzkPfnvfnbY+sOdIT tEIzllGwMyRkHOGB0J4RAql+n+yMSNEfda+qJv7TVNvodb3dtcYjokpU/RAx8TMH +0Txz8i+kQs9SPKK1FYTMujUGqZ/0h5vvEWkrGl/HekV0MFlOu9cs+l2MaEdC8jO tAvujY5B20FlQGEebOCehLOh1ihFZbEbWsvHtmYFnZEGBY/xJTApg/HEgi40S8E6 0L7k5cFZGh+4f6YhatGeh1EWk+yKs1yapDq+WwOD3OMfB+S5w064bKIMW5wUqR6t uKVQ+KSgKuurUdeDdDpCFdTJKW/OLbuXs6ZNdjOSiQtT3PoF8pRSg7bFN+sA0rbd 4Tf9z03EfWE8wEbRZT79tNhYwmwk3TpOPr02B8Y6u12w1f24YXZfgrOuKPAYHLTW bbs4XVz/VVD9ajQHfIS/VBk5tKsp3dXulPJskjXRPUQRwqBPsffCOzA/kk6HMzxM 1mYrexKB7JU= =RxbC -----END PGP SIGNATURE-----
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