Your message dated Fri, 07 Jul 2017 18:51:41 +0000
with message-id <e1dtylt-0000h8...@fasolo.debian.org>
and subject line Bug#866768: fixed in r-base 3.4.1-2
has caused the Debian Bug report #866768,
regarding r-base: R does not set the default user directory.
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
866768: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=866768
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: r-base
Version: 3.4.1-1
Severity: important
By default, when asked to install or upgrade a package as a non-root user, R
creates a subdirectory in the home directory for such packages, and puts it at
the front of the library path. After the upgrade, I get the following:
$ R
R version 3.4.1 (2017-06-30) -- "Single Candle"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
[SNIP]
> update.packages(ask=FALSE)
--- Please select a CRAN mirror for use in this session ---
Warning in install.packages(update[instlib == l, "Package"], l, contriburl =
contriburl, :
'lib = "/usr/lib/R/site-library"' is not writable
Would you like to use a personal library instead? (y/n) y
Would you like to create a personal library
NA
to install packages into? (y/n) y
Error in install.packages(update[instlib == l, "Package"], l, contriburl =
contriburl, :
unable to create ‘NA’
For some reason, rather than creating the usual path (i.e.,
$HOME/R/$architecture/$Rversion), the path it looks for is NA.
-- System Information:
Debian Release: buster/sid
APT prefers testing
APT policy: (990, 'testing'), (500, 'unstable'), (500, 'stable'), (1,
'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.9.0-3-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8),
LANGUAGE=en_AU.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
Versions of packages r-base depends on:
ii r-base-core 3.4.1-1
ii r-recommended 3.4.1-1
Versions of packages r-base recommends:
ii r-base-html 3.4.1-1
ii r-doc-html 3.4.1-1
Versions of packages r-base suggests:
ii ess 16.10-1
pn r-doc-info | r-doc-pdf <none>
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: r-base
Source-Version: 3.4.1-2
We believe that the bug you reported is fixed in the latest version of
r-base, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 866...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dirk Eddelbuettel <e...@debian.org> (supplier of updated r-base package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 07 Jul 2017 13:05:03 -0500
Source: r-base
Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf
r-doc-html r-doc-info r-recommended r-base-core-dbg
Architecture: source amd64 all
Version: 3.4.1-2
Distribution: unstable
Urgency: medium
Maintainer: Dirk Eddelbuettel <e...@debian.org>
Changed-By: Dirk Eddelbuettel <e...@debian.org>
Description:
r-base - GNU R statistical computation and graphics system
r-base-core - GNU R core of statistical computation and graphics system
r-base-core-dbg - GNU R debug symbols for statistical comp. language and
environmen
r-base-dev - GNU R installation of auxiliary GNU R packages
r-base-html - GNU R html docs for statistical computing system functions
r-doc-html - GNU R html manuals for statistical computing system
r-doc-info - GNU R info manuals statistical computing system
r-doc-pdf - GNU R pdf manuals for statistical computing system
r-mathlib - GNU R standalone mathematics library
r-recommended - GNU R collection of recommended packages [metapackage]
Closes: 866768
Changes:
r-base (3.4.1-2) unstable; urgency=medium
.
* etc/Renviron.in: No longer unset R_LIBS_USER (Closes: #866768)
Checksums-Sha1:
0a19bae3109bc907bfe0a20f1710f57b1b5ee9ac 2832 r-base_3.4.1-2.dsc
44bb0cef6efd08939f3ec3c19bed0c3633b9d439 86404 r-base_3.4.1-2.debian.tar.xz
601c508eae046a184838c1e7aa927fe9c4b2d485 3352414
r-base-core-dbg_3.4.1-2_amd64.deb
9352c8759bf2730f9063d2473f0607d9b9598b43 23199284 r-base-core_3.4.1-2_amd64.deb
75827da698ebb4cf609950bed3f145824c891eab 4410 r-base-dev_3.4.1-2_all.deb
455bf1ca376bb19a402d8079f6cbbb8506036109 86514 r-base-html_3.4.1-2_all.deb
9a82aecf31b92a29382bd40b818073f8dd1b7041 40934 r-base_3.4.1-2_all.deb
4ee22d82805ec44fe9647ab8fba1629be64df231 17744 r-base_3.4.1-2_amd64.buildinfo
48884af2895f6d223fb9ab7171f48b94860ecff0 553862 r-doc-html_3.4.1-2_all.deb
0ec7c1e6101780446ebad65c4d0a6b35190d2a77 615088 r-doc-info_3.4.1-2_all.deb
b6ccb576b2b8498daaf3e1dfae7c5e51ae9b83b3 9224614 r-doc-pdf_3.4.1-2_all.deb
972dffe28100a1b4b921126e0fbb3351bdac3f45 1694522 r-mathlib_3.4.1-2_amd64.deb
80ff68e0d51dc50bc774e65169fd8b320d3268b8 2714 r-recommended_3.4.1-2_all.deb
Checksums-Sha256:
df5edc22cb58265f6b0bcd65c7c12c5c3bc3eafdd421756dc76ad0d919db50fd 2832
r-base_3.4.1-2.dsc
daa11610459e0f8635bd0e2dfd59e2ee87090328a3600e7e9ba31c48713c37db 86404
r-base_3.4.1-2.debian.tar.xz
ce43356080e8f05ae14e7f851a21edd82954eee29a2dfaad38d88ace60845804 3352414
r-base-core-dbg_3.4.1-2_amd64.deb
2e3e817f19a725a25886ed94d0eab93b5050f365285b3625a1c820a5bce2ac4f 23199284
r-base-core_3.4.1-2_amd64.deb
53a05142ad4b9fa7c62214f9bc752f927e0c07d79bf7660b1338b7487132c000 4410
r-base-dev_3.4.1-2_all.deb
fd2d24090ea503bb2550228daa57fc8e5068cee1153b534241f31c3e486bd750 86514
r-base-html_3.4.1-2_all.deb
1e9f4b90492c13e796bc850047533fef3d46843e17730c58dddcefc28161dc69 40934
r-base_3.4.1-2_all.deb
fb164fdbc1f2e905953497d79e9f9f04c3baaa21b0a0c13b85b62a132fed0990 17744
r-base_3.4.1-2_amd64.buildinfo
75b1f8397eedc5c2bea96037f94ba357eec7f80afdb019dc95caa08c8592b349 553862
r-doc-html_3.4.1-2_all.deb
ac11b78f8def0e6a47f5909132d324778b661de503524875ede38516fb677b18 615088
r-doc-info_3.4.1-2_all.deb
2316712650f67f712df699045c8f4109bcfcf8131efc93b6114ba3f8bbf53bc5 9224614
r-doc-pdf_3.4.1-2_all.deb
dd1f80fe9620410a4bd78d1e72604e728c8055b785a1968f1d2e72d7a00fab22 1694522
r-mathlib_3.4.1-2_amd64.deb
4c135cb2c792f507ce797a8589133eaaa0c43006c22ca6e0014cd292855c44ea 2714
r-recommended_3.4.1-2_all.deb
Files:
b21f4236aac6b1da9368ee45b8f636d8 2832 gnu-r optional r-base_3.4.1-2.dsc
87a3051badcb49d184f426981ffb021a 86404 gnu-r optional
r-base_3.4.1-2.debian.tar.xz
97b93bdcd944695a9a09a667c78b1416 3352414 debug extra
r-base-core-dbg_3.4.1-2_amd64.deb
353761c5bfa7e477e7242022e9806e2a 23199284 gnu-r optional
r-base-core_3.4.1-2_amd64.deb
f6c7a69b7bb2a7e10858a5cfeb25c082 4410 gnu-r optional r-base-dev_3.4.1-2_all.deb
d0aa9a4a6057756774e4e5d560a842db 86514 doc extra r-base-html_3.4.1-2_all.deb
3750d72e1912657ec2ec261fd7005b08 40934 gnu-r optional r-base_3.4.1-2_all.deb
849341810e29a9c7e1db87b2126db4d5 17744 gnu-r optional
r-base_3.4.1-2_amd64.buildinfo
69a1cb01eb9941dc8cb1f683c8be9849 553862 doc optional r-doc-html_3.4.1-2_all.deb
a40f638b80a09b518fafaaeb3de6cb01 615088 doc optional r-doc-info_3.4.1-2_all.deb
51c2961c7cf6cb207719fc1879f1223d 9224614 doc optional r-doc-pdf_3.4.1-2_all.deb
096c777a8f6aca1032b902331cad6e0a 1694522 gnu-r optional
r-mathlib_3.4.1-2_amd64.deb
94a586053b0a5e6e775fc22dfce59ba3 2714 gnu-r optional
r-recommended_3.4.1-2_all.deb
-----BEGIN PGP SIGNATURE-----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=2ljv
-----END PGP SIGNATURE-----
--- End Message ---
