Your message dated Mon, 17 Jul 2017 09:13:04 +0000 with message-id <e1dx25q-0001xu...@fasolo.debian.org> and subject line Bug#866365: fixed in libbpp-phyl 2.3.1-9 has caused the Debian Bug report #866365, regarding libbpp-phyl FTBFS on mips/mipsel: test failures to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 866365: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=866365 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: libbpp-phyl Version: 2.3.1-1 Severity: serious https://buildd.debian.org/status/package.php?p=libbpp-phyl&suite=sid Test 4 always fails, and only on mips/mipsel: ... Start 4: test_likelihood_clock 3/14 Test #4: test_likelihood_clock ............***Failed 226.51 sec / 1 - 2 \ 3 - 4 / 5 - 6 \ 7 nodes loaded. Initializing data structure............: Done. Number of distinct sites...............: 14 Test model.............................: T92 93.017264552573323044 * initial likelihood...................: 93.0173 Log-likelihood after adding clock......: 93.0173 Optimizing... / 1 Optimizing... - 2 Optimizing... \ 3 Optimizing... - 4 Optimizing... / 5 Optimizing... - 6 Optimizing... \ 7 Optimizing... - 8 Optimizing... / 9 Optimizing... - 10 Optimizing... \ 11 Optimizing... - 12 Optimizing... / 13 Optimizing... - 14 Optimizing... \ 15 Optimizing... - 16 Optimizing... / 17 Optimizing... - 18 Optimizing... \ 19 Optimizing... - 20 Optimizing... / 21 Optimizing... - 22 Optimizing... \ 23 Optimizing... - 24 Optimizing... / 25 Optimizing... - 26 Optimizing... \ 27 Optimizing... - 28 Optimizing... / 29 Optimizing... - 30 Optimizing... \ 31 Optimizing... - 32 Optimizing... / 33 Optimizing... - 34 Optimizing... \ 35 Optimizing... - 36 Optimizing... / 37 Optimizing... - 38 Optimizing... \ 39 Optimizing... - 40 Optimizing... / 41 Optimizing... - 42 Optimizing... \ 43 Optimizing... - 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300 Optimizing... / 301 Optimizing... - 302 Optimizing... \ 303 Optimizing... - 304 Optimizing... / 305 Optimizing... - 306 Optimizing... \ 307 Optimizing... - 308 Optimizing... / 309 Optimizing... - 310 Optimizing... \ 311 Optimizing... - 312 75.078278893520362658 * likelihood after full optimization...: 75.0783 Name: Value: Constraint: _________________________________________________ BrLen0 0.106560 [ 1e-06; 10000] BrLen1 0.106560 [ 1e-06; 10000] BrLen2 0.104086 [ 1e-06; 10000] BrLen3 0.210646 [ 1e-06; 10000] BrLen4 407.045446 [ 1e-06; 10000] BrLen5 407.256092 [ 1e-06; 10000] T92.kappa 0.375070 ]0; +inf[ T92.theta 0.583589 ]1e-06; 0.999999[ Gamma.alpha 0.050000 [ 0.05; +inf[ Incorrect final value. ... Tests 5,6,11 timeout again in 2.3.1-5 on mips, as slowest release architecture it might require an even bigger increase of the timeout?
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--- Begin Message ---Source: libbpp-phyl Source-Version: 2.3.1-9 We believe that the bug you reported is fixed in the latest version of libbpp-phyl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 866...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Julien Dutheil <julien.duth...@univ-montp2.fr> (supplier of updated libbpp-phyl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 17 Jul 2017 09:24:23 +0200 Source: libbpp-phyl Binary: libbpp-phyl-dev libbpp-phyl11 Architecture: source Version: 2.3.1-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Julien Dutheil <julien.duth...@univ-montp2.fr> Description: libbpp-phyl-dev - Bio++ Phylogenetic library development files libbpp-phyl11 - Bio++ Phylogenetic library Closes: 866365 Changes: libbpp-phyl (2.3.1-9) unstable; urgency=medium . * Further increased time out limit for unit tests. Closes: 866365 Checksums-Sha1: 7c9de2da78e05ae6112fcb39d27459dfd90d0ca1 2166 libbpp-phyl_2.3.1-9.dsc 83a5fe742fea8097475eb7d8323a1e7b8f9c0923 8100 libbpp-phyl_2.3.1-9.debian.tar.xz 19e6e16c3ceb95e074e71d70aacb87d0413f99df 13271 libbpp-phyl_2.3.1-9_source.buildinfo Checksums-Sha256: 10a9cebd58a13bd8e662bcc6e718ef834084515bd1109a7d139c442f97588a0a 2166 libbpp-phyl_2.3.1-9.dsc 0c00a013814c1135090e9fda475942d9cfbd3b28569051a867729fe3bd48eb64 8100 libbpp-phyl_2.3.1-9.debian.tar.xz ffcec85f51a8cc47ed21254519d911133134c2d9d1545276a78038b90f298c5a 13271 libbpp-phyl_2.3.1-9_source.buildinfo Files: 09a232a6abe22d834f1f5ceb86c456ff 2166 science optional libbpp-phyl_2.3.1-9.dsc 3f1b1bd4c0a5b61e2ee03329ed3466e4 8100 science optional libbpp-phyl_2.3.1-9.debian.tar.xz 6989bae4f8198e209cd557fff6554b3d 13271 science optional libbpp-phyl_2.3.1-9_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAllsbjQOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGB3g/9H//iSfsMQefxD8bsmLInboyBqqS5+HCIZuUk 4fB13heYwqsZcTb17NnwVOzWRp84ZBWT1Bc4Y8UYImPHb7OT+HWD3DyMC/V7/rBh PytL2FturYREK+ygbdJx0elzeF5+zc8DYHv8UOYFUuge8vrLri3MnDDkY7vGHEVr EamGPU0OpTn0GTbBhuoI8qFbhG6/nMB0Bpful4DS8VGtUKmI+ggT9eP/zREpYqN0 EIDO4lavShPpO0bCA0FzYcgStwDFf6SaKoezyra8eFxbDzBXHgTRdhl5MnCUB9Ax pQGFbb1GEV2h+zX/ic8IkWsPRyhF0hqvn8tv+0qNYT2vjWpUgAmSG/LAPT1XVIm0 F4Em4tXQIq/fLVj0EH3o/bay5r/pOdz4Sz1C6v4GxGln6FMHPDdZYfAosE/e7nmL P9EaNQiawNw+3hQzAECRwkJsIXcPWGnvCyYhMElCGL7FqcxpSeHDnbC8B8z/alAo Jb28B2uglvGr2Zbnr7oVaMK7H/1B7oMHfkJzSmhaFARXf/M7F3Uj/xTIjuycxKue 5Ydeqncq9EdzC0s4mZQ3IHb2vc6AiJS8+rLIfZyUIzoBWPpvsRK/HOzx78OrzCTL Arw6UEwqqEgEGbwsMvbJl22BEnzICMkb83+SroO96QwQB7Nh+F41NiDFqM3H73wO GGrOLzQ= =R6gV -----END PGP SIGNATURE-----
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