Your message dated Mon, 28 Aug 2017 22:12:55 +0000
with message-id <[email protected]>
and subject line Bug#870228: fixed in physamp 1.0.2-2
has caused the Debian Bug report #870228,
regarding physamp: fails to upgrade from 'stretch' - trying to overwrite
/usr/bin/bppphysamp
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
870228: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=870228
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: physamp
Version: 1.0.2-1
Severity: serious
User: [email protected]
Usertags: piuparts
Hi,
during a test with piuparts I noticed your package fails to upgrade from
'stretch'.
It installed fine in 'stretch', then the upgrade to 'sid' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.
See policy 7.6 at
https://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces
>From the attached log (scroll to the bottom...):
Selecting previously unselected package physamp.
Preparing to unpack .../physamp_1.0.2-1_amd64.deb ...
Unpacking physamp (1.0.2-1) ...
dpkg: error processing archive
/var/cache/apt/archives/physamp_1.0.2-1_amd64.deb (--unpack):
trying to overwrite '/usr/bin/bppphysamp', which is also in package bppsuite
2.2.0-0.1+b1
dpkg-deb: error: subprocess paste was killed by signal (Broken pipe)
Errors were encountered while processing:
/var/cache/apt/archives/physamp_1.0.2-1_amd64.deb
cheers,
Andreas
bppsuite=2.2.0-0.1+b1_physamp=1.0.2-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: physamp
Source-Version: 1.0.2-2
We believe that the bug you reported is fixed in the latest version of
physamp, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Julien Dutheil <[email protected]> (supplier of updated physamp
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 09 Aug 2017 23:25:04 +0200
Source: physamp
Binary: physamp
Architecture: source
Version: 1.0.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Julien Dutheil <[email protected]>
Description:
physamp - sample sequence alignment according to its corresponding phylogen
Closes: 870228
Changes:
physamp (1.0.2-2) unstable; urgency=medium
.
[ Julien Dutheil ]
* Added bppsuite breaks+replaces statement
Closes: #870228
* Updated description to include bppPhySamp program.
* Does not override debian cxx flags anymore.
.
[ Andreas Tille ]
* Standards-Version: 4.1.0 (no changes needed)
* use `cme fix dpkg-control` to adjust line length in description
Checksums-Sha1:
f2698b55e6b356ab3ad597335a95154874d518e7 2048 physamp_1.0.2-2.dsc
de7977e050b20fcd01dd2960ac5656b1e7d3d711 3008 physamp_1.0.2-2.debian.tar.xz
b95621662d4e3b23f99b3131e4b5ca09265b69d1 13461 physamp_1.0.2-2_source.buildinfo
Checksums-Sha256:
58de8205b6cabd44093ee23cf03585899eb28a76872d9f885d3b1d75882d7ca8 2048
physamp_1.0.2-2.dsc
c4ce2fade6977416ae3dcc3253faed2cc5da26699db4400e2022c0a8437775ad 3008
physamp_1.0.2-2.debian.tar.xz
4ca92154ac4aa1e7db200c0e9d7f59c1fafe5fee589afa952916e02c8d6f0d98 13461
physamp_1.0.2-2_source.buildinfo
Files:
fe03d0260496474341f449271715a9ef 2048 science optional physamp_1.0.2-2.dsc
5eb6fb126fd056adb1f187cc4dd1fbce 3008 science optional
physamp_1.0.2-2.debian.tar.xz
5673ac367f0eb9cef437240b2a40ee0a 13461 science optional
physamp_1.0.2-2_source.buildinfo
-----BEGIN PGP SIGNATURE-----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=xWTd
-----END PGP SIGNATURE-----
--- End Message ---
