Your message dated Sat, 2 Sep 2017 15:27:22 +0200 with message-id <[email protected]> and subject line Close bug has caused the Debian Bug report #871098, regarding bppsuite: FTBFS: CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o:(.data.rel.ro._ZTVN3bpp24ConstantRateDistributionE[_ZTVN3bpp24ConstantRateDistributionE]+0x278): undefined reference to `virtual thunk to bpp::AbstractParameterAliasable::getAliases[abi:cxx11]() const' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 871098: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=871098 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: bppsuite Version: 2.3.1-3 Severity: serious Tags: buster sid User: [email protected] Usertags: qa-ftbfs-20170805 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -Wl,-z,relro > -Wl,-z,now -rdynamic CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars > /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.11.0.0 > /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.7.0.0 > /usr/lib/x86_64-linux-gnu/libbpp-seq.so.11.0.0 > /usr/lib/x86_64-linux-gnu/libbpp-core.so.3.0.0 > CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o:(.data.rel.ro._ZTVN3bpp24ConstantRateDistributionE[_ZTVN3bpp24ConstantRateDistributionE]+0x278): > undefined reference to `virtual thunk to > bpp::AbstractParameterAliasable::getAliases[abi:cxx11]() const' > CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o:(.data.rel.ro._ZTCN3bpp24ConstantRateDistributionE0_NS_20ConstantDistributionE[_ZTVN3bpp24ConstantRateDistributionE]+0x278): > undefined reference to `virtual thunk to > bpp::AbstractParameterAliasable::getAliases[abi:cxx11]() const' > CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o:(.data.rel.ro._ZTCN3bpp24ConstantRateDistributionE0_NS_28AbstractDiscreteDistributionE[_ZTVN3bpp24ConstantRateDistributionE]+0x278): > undefined reference to `virtual thunk to > bpp::AbstractParameterAliasable::getAliases[abi:cxx11]() const' > CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o:(.data.rel.ro._ZTCN3bpp24ConstantRateDistributionE144_NS_26AbstractParameterAliasableE[_ZTVN3bpp24ConstantRateDistributionE]+0x2f0): > undefined reference to `virtual thunk to > bpp::AbstractParameterAliasable::getAliases[abi:cxx11]() const' > collect2: error: ld returned 1 exit status The full build log is available from: http://aws-logs.debian.net/2017/08/05/bppsuite_2.3.1-3_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Hi, the problem occured due to libbpp libraries build by gcc-6 which created a conflict that is solved now after all libs are rebuilt with gcc-7. Kind regards Andreas. -- http://fam-tille.de
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