Your message dated Thu, 7 Dec 2017 11:55:53 +0200
with message-id <[email protected]>
and subject line Re: Bug#877288: r-base: Rebuilding r-bioc-biocgenerics with
new R changes behaviour
has caused the Debian Bug report #877288,
regarding r-base: fix calling methods on dots generics
to be marked as done.
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877288: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=877288
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--- Begin Message ---
Source: r-base
Version: 3.4.1.20170921-1
Affects: r-bioc-biocgenerics r-bioc-iranges r-bioc-variantannotation
User: [email protected]
Usertags: origin-ubuntu artful autopkgtest
Hi Dirk
Rebuilding the arch:all package r-bioc-biocgenerics against r-base-dev
3.4.1.20170921-1 or 3.4.2-1 seems to cause the eventual failure of
autopkgtests in r-bioc-iranges and r-bioc-variantannotation.
IRanges RUnit Tests - 91 test functions, 2 errors, 0 failures
ERROR in test_AtomicList_general: Error in match.arg(method) : 'arg'
must be of length 1
ERROR in test_AtomicList_numerical: Error in match.arg(method) : 'arg'
must be of length 1
VariantAnnotation RUnit Tests - 80 test functions, 1 error, 0 failures
ERROR in test_VRanges_vcf: Error in match.arg(method) : 'arg' must be
of length 1
On a system with all of the packages built against r-base-dev 3.4.2-1,
force-installing only the old r-bioc-biocgenerics package makes the
"'arg' must be of length 1" error disappear and the tests pass.
Similarly, on a system with all of the old packages, force-installing
only r-bioc-biocgenerics built against r-base-dev 3.4.2-1 causes the
error to appear.
Any ideas what could be causing this or how I can debug this further,
please? Might r-bioc-biocgenerics/r-bioc-iranges/r-bioc-variantannotation
need some changes to be compatible with R 3.4.2?
Regards
Graham
--- End Message ---
--- Begin Message ---
Version: 3.4.2.20171120-1
The first R 3.4.3 beta included this fix.
--- End Message ---
