Your message dated Tue, 15 May 2018 10:04:41 +0200
with message-id <[email protected]>
and subject line Re: Bug#897756: Bug#897756: fw4spl: ftbfs with GCC-8
has caused the Debian Bug report #897859,
regarding simpleitk: ftbfs with GCC-8
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
897859: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897859
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:simpleitk
Version: 1.0.1-2
Severity: normal
Tags: sid buster
User: [email protected]
Usertags: ftbfs-gcc-8
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-8/g++-8, but succeeds to build with gcc-7/g++-7. The
severity of this report will be raised before the buster release.
The full build log can be found at:
http://aws-logs.debian.net/2018/05/01/gcc8/simpleitk_1.0.1-2_unstable_gcc8.log.gz
The last lines of the build log are at the end of this report.
To build with GCC 8, either set CC=gcc-8 CXX=g++-8 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-8/porting_to.html
[...]
cd /<<PKGBUILDDIR>>/SimpleITK-build/Code/BasicFilters && /usr/bin/lua
/<<PKGBUILDDIR>>/ExpandTemplateGenerator/ExpandTemplate.lua code
/<<PKGBUILDDIR>>/Code/BasicFilters/json/YenThresholdImageFilter.json
/<<PKGBUILDDIR>>/Code/BasicFilters/templates/sitk
/<<PKGBUILDDIR>>/ExpandTemplateGenerator/Components Template.cxx.in
/<<PKGBUILDDIR>>/SimpleITK-build/Code/BasicFilters/src/sitkYenThresholdImageFilter.cxx
make[3]: Leaving directory '/<<PKGBUILDDIR>>/SimpleITK-build'
make[3]: Entering directory '/<<PKGBUILDDIR>>/SimpleITK-build'
cd /<<PKGBUILDDIR>>/SimpleITK-build/Code/BasicFilters && /usr/bin/lua
/<<PKGBUILDDIR>>/ExpandTemplateGenerator/ExpandTemplate.lua code
/<<PKGBUILDDIR>>/Code/BasicFilters/json/ZeroFluxNeumannPadImageFilter.json
/<<PKGBUILDDIR>>/Code/BasicFilters/templates/sitk
/<<PKGBUILDDIR>>/ExpandTemplateGenerator/Components Template.cxx.in
/<<PKGBUILDDIR>>/SimpleITK-build/Code/BasicFilters/src/sitkZeroFluxNeumannPadImageFilter.cxx
make[3]: Leaving directory '/<<PKGBUILDDIR>>/SimpleITK-build'
make[2]: Entering directory '/<<PKGBUILDDIR>>/SimpleITK-build'
[ 54%] Built target BasicFiltersSourceCode
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SimpleITK-build'
make[3]: Entering directory '/<<PKGBUILDDIR>>/SimpleITK-build'
cd /<<PKGBUILDDIR>>/SimpleITK-build/Testing/Unit/GTest-build/googlemock/gtest
&& /usr/bin/c++ -I/usr/include/hdf5/serial -I/usr/include/x86_64-linux-gnu
-I/usr/include/nifti -I/usr/include/gdcm-2.8 -I/usr/include/double-conversion
-I/usr/include/ITK-4.12 -I/usr/src/googletest/googletest/include
-I/usr/src/googletest/googletest -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra
-Wno-unused-parameter -Wno-missing-field-initializers -o
CMakeFiles/gtest.dir/src/gtest-all.cc.o -c
/usr/src/googletest/googletest/src/gtest-all.cc
make[3]: Leaving directory '/<<PKGBUILDDIR>>/SimpleITK-build'
make[3]: Entering directory '/<<PKGBUILDDIR>>/SimpleITK-build'
[ 54%] Linking CXX static library ../../../../../lib/libgtest.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/SimpleITK-build'
make[3]: Entering directory '/<<PKGBUILDDIR>>/SimpleITK-build'
cd /<<PKGBUILDDIR>>/SimpleITK-build/Testing/Unit/GTest-build/googlemock/gtest
&& /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake
make[3]: Leaving directory '/<<PKGBUILDDIR>>/SimpleITK-build'
make[3]: Entering directory '/<<PKGBUILDDIR>>/SimpleITK-build'
cd /<<PKGBUILDDIR>>/SimpleITK-build/Testing/Unit/GTest-build/googlemock/gtest
&& /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1
/usr/bin/ar qc ../../../../../lib/libgtest.a
CMakeFiles/gtest.dir/src/gtest-all.cc.o
/usr/bin/ranlib ../../../../../lib/libgtest.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/SimpleITK-build'
make[2]: Entering directory '/<<PKGBUILDDIR>>/SimpleITK-build'
[ 54%] Built target gtest
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SimpleITK-build'
make[3]: Entering directory '/<<PKGBUILDDIR>>/SimpleITK-build'
cd /<<PKGBUILDDIR>>/SimpleITK-build/Code/Common/src && /usr/bin/c++
-DSimpleITKCommon_EXPORTS -isystem /usr/include/ITK-4.12
-I/<<PKGBUILDDIR>>/Code/Common/include
-I/<<PKGBUILDDIR>>/SimpleITK-build/Code/Common/include -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wno-long-long
-Wno-unused-local-typedefs -Wno-strict-overflow -Wextra -Wformat=2
-Wno-format-nonliteral -Wunused -Wpointer-arith -Winvalid-pch -Wcast-align
-Wdisabled-optimization -Woverloaded-virtual -Wshadow -Wwrite-strings
-Wstrict-null-sentinel -Wno-invalid-offsetof -o
CMakeFiles/SimpleITKCommon.dir/sitkImageExplicit.cxx.o -c
/<<PKGBUILDDIR>>/Code/Common/src/sitkImageExplicit.cxx
In file included from /usr/include/ITK-4.12/vcl_limits.h:5,
from /usr/include/ITK-4.12/itkNumericTraits.h:51,
from /usr/include/ITK-4.12/itkConceptChecking.h:32,
from /usr/include/ITK-4.12/itkAtomicIntDetail.h:39,
from /usr/include/ITK-4.12/itkAtomicInt.h:38,
from /usr/include/ITK-4.12/itkTimeStamp.h:33,
from /usr/include/ITK-4.12/itkLightObject.h:23,
from /usr/include/ITK-4.12/itkObject.h:31,
from /usr/include/ITK-4.12/itkRegion.h:31,
from /usr/include/ITK-4.12/itkImageRegion.h:31,
from /usr/include/ITK-4.12/itkImage.h:21,
from /<<PKGBUILDDIR>>/Code/Common/src/sitkImage.hxx:23,
from /<<PKGBUILDDIR>>/Code/Common/src/sitkImageExplicit.cxx:33:
/usr/include/ITK-4.12/vcl_compiler.h:90:4: error: #error "Dunno about this gcc"
# error "Dunno about this gcc"
^~~~~
make[3]: *** [Code/Common/src/CMakeFiles/SimpleITKCommon.dir/build.make:79:
Code/Common/src/CMakeFiles/SimpleITKCommon.dir/sitkImageExplicit.cxx.o] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/SimpleITK-build'
make[2]: *** [CMakeFiles/Makefile2:1085:
Code/Common/src/CMakeFiles/SimpleITKCommon.dir/all] Error 2
make[1]: *** [Makefile:166: all] Error 2
dh_auto_build: cd SimpleITK-build && make -j8 -Oline "INSTALL=install
--strip-program=true" returned exit code 2
make: *** [debian/rules:37: build-arch] Error 25
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit
status 2
--- End Message ---
--- Begin Message ---
Hi Emmanuel,
I'm to lazy to look up the control fields to close a bug since I know
the method to send an e-mail to [email protected] works
(which I'm hereby doing). :-)
Kind regards
Andreas.
On Tue, May 15, 2018 at 08:47:24AM +0200, Emmanuel Promayon wrote:
> Dear all,
>
> Thank you for analysis, patch and upload of insighttoolkit4 with the correct
> fix!
>
> There are three other bugs that are affected by #897899:
> - #897759
> - #897859
> - #897715
>
> I am not sure about the control tags to send to update them (same as the one
> Andreas sent to #897756?)
>
> Kind regards
> Emmanuel
>
>
> On 08/05/18 22:17, Andreas Tille wrote:
> > Control: reasign -1 src:insighttoolkit4;
> > Control: merge -1 897899
> >
> > On Tue, May 08, 2018 at 05:31:19PM +0200, Flavien Bridault wrote:
> > > Actually, the error from the log shows an error from VXL. This is a
> > > typical error of the VXL when upgrading gcc, I had to patch it many
> > > times because their header is often a bit outdated. Actually I said VXL,
> > > but that's an embedded version of VXL shipped byt ITK, thus
> > > insighttoolkit4 package. You can easily guess the error looking at the
> > > header
> > > https://github.com/InsightSoftwareConsortium/ITK/blob/master/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h
> > > and the fix is also rather obvious. Please tell me how we should proceed
> > > with this, but I think the reported bug is a duplicate of
> > > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897899. However, of
> > > course once this is fixed, there might be something else broken....
> > Thanks for your analysis. The two lines on top of this mail are the
> > "technical implementation" of it - just reassign the issue to
> > insighttoolkit4 and merge the bugs (at least if I have done it
> > correctly ...)
> >
> > Kind regards
> >
> > Andreas.
> >
>
> --
> Emmanuel Promayon
> Professeur Univ. Grenoble Alpes / Polytech Grenoble
> Laboratoire TIMC-IMAG / équipe GMCAO
> Tel. +33/0 456 52 00 03
>
>
> _______________________________________________
> Debian-med-packaging mailing list
> [email protected]
> https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging
--
http://fam-tille.de
--- End Message ---
