Your message dated Fri, 18 May 2018 11:19:32 +0000
with message-id <[email protected]>
and subject line Bug#898989: fixed in altree 1.3.1-6
has caused the Debian Bug report #898989,
regarding altree: FTBFS with Perl 5.27: _quicksort sub-pragma removed
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
898989: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=898989
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: altree
Version: 1.3.1-5
Severity: important
User: [email protected]
Usertags: perl-5.28-transition
Tags: patch
When rebuilding altree against perl 5.27.11, we found this problem caused
by the removal of the '_quicksort' sub-pragma to sort:
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness"
"-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')"
t/*.t
# Failed test 'use ALTree::Import;'
# at t/ALTree.t line 9.
# Tried to use 'ALTree::Import'.
# Error: sort: unknown subpragma '_quicksort' at
/<<PKGBUILDDIR>>/blib/lib/ALTree/SitePerForet.pm line 10.
With the attached patch, altree builds under perl 5.27.11.
This file doesn't even seem to use perl's sort function, so the change
is effectively a no-op.
Thanks,
Dominic.
>From 792e0f374d932af390df409d61710633d60e2717 Mon Sep 17 00:00:00 2001
From: Dominic Hargreaves <[email protected]>
Date: Fri, 18 May 2018 11:21:09 +0200
Subject: [PATCH] Remove unused _quicksort sub-pragma, no longer supported in
Perl 5.27
---
debian/changelog | 7 +++++++
debian/patches/no-quicksort.patch | 15 +++++++++++++++
debian/patches/series | 1 +
3 files changed, 23 insertions(+)
create mode 100644 debian/patches/no-quicksort.patch
diff --git a/debian/changelog b/debian/changelog
index ec75751..505ee30 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+altree (1.3.1-5.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Remove unused _quicksort sub-pragma, no longer supported in Perl 5.27
+
+ -- Dominic Hargreaves <[email protected]> Fri, 18 May 2018 11:20:24 +0200
+
altree (1.3.1-5) unstable; urgency=medium
* Moved packaging from SVN to Git
diff --git a/debian/patches/no-quicksort.patch b/debian/patches/no-quicksort.patch
new file mode 100644
index 0000000..735d231
--- /dev/null
+++ b/debian/patches/no-quicksort.patch
@@ -0,0 +1,15 @@
+Author: Dominic Hargreaves <[email protected]>
+Description: Remove unused _quicksort sub-pragma, no longer supported in Perl 5.27
+
+diff --git a/ALTree/SitePerForet.pm b/ALTree/SitePerForet.pm
+index bbfbb4d..eaf805e 100644
+--- a/ALTree/SitePerForet.pm
++++ b/ALTree/SitePerForet.pm
+@@ -7,7 +7,6 @@ package ALTree::SitePerForet;
+ ################################################################
+
+ use base qw(ALTree::Base ALTree::Site);
+-use sort '_quicksort';
+
+ sub New { # [classe] site_nb
+ my $class=shift;
diff --git a/debian/patches/series b/debian/patches/series
index f412662..ddb8d43 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1 +1,2 @@
from-upstream-no-nested-functions.patch
+no-quicksort.patch
--
2.11.0
--- End Message ---
--- Begin Message ---
Source: altree
Source-Version: 1.3.1-6
We believe that the bug you reported is fixed in the latest version of
altree, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated altree package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 18 May 2018 12:01:00 +0200
Source: altree
Binary: altree altree-examples
Architecture: source
Version: 1.3.1-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
altree - program to perform phylogeny-based association and localization a
altree-examples - example files for ALTree
Closes: 898989
Changes:
altree (1.3.1-6) unstable; urgency=medium
.
[ Dominic Hargreaves ]
* Remove unused _quicksort sub-pragma, no longer supported in Perl 5.27
Closes: #898989
.
[ Andreas Tille ]
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* Drop useless get-orig-source target
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