Your message dated Tue, 22 May 2018 20:37:59 +0000
with message-id <[email protected]>
and subject line Bug#894781: fixed in bedtools 2.27.1+dfsg-2
has caused the Debian Bug report #894781,
regarding bedtools: autopkgtest fails while it succeeded in the past
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
894781: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=894781
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: bedtools
Version: 2.27.1+dfsg-1
Severity: normal
User: [email protected]
Usertags: regression
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Since the upload of bedtools version 2.27.1+dfsg-1, your package fails to pass
its test suite¹ with the following error:
- --------------------------
Test Results
- --------------------------
Tools passing: bamtobed bamtofastq bed12tobed6 closest cluster complement
coverage expand fisher flank general genomecov getfasta groupby intersect
jaccard makewindows map merge multicov reldist sample shift shuffle slop sort
spacing split subtract
Tools failing: negativecontrol
NB: the 'negativecontrol' test is supposed to fail. If it wasn't caught,
something went wrong with this test script.
Paul
¹ https://ci.debian.net/packages/b/bedtools/unstable/amd64/
- -- System Information:
Debian Release: buster/sid
APT prefers testing-debug
APT policy: (500, 'testing-debug'), (500, 'testing'), (200, 'testing'), (50,
'testing')
Architecture: amd64 (x86_64)
Kernel: Linux 4.15.0-2-amd64 (SMP w/2 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8),
LANGUAGE=en_US:en (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
-----BEGIN PGP SIGNATURE-----
iQEzBAEBCAAdFiEEWLZtSHNr6TsFLeZynFyZ6wW9dQoFAlrEi1cACgkQnFyZ6wW9
dQpJ9QgAu5vlTtMod6AVNGYGpDvAsk3W6U92VTS6679v0ljpnnLuhydTbfk6Cj3l
KTmNXbXXwXZNb1yEL6KQRYsL9bu5lCIWkb7vvJGizN7HjWuPZ+MB+t5tb9PW96Vr
T7zNK87oQqKiFO0oqgloUWdQZYEkQh5QSSYK9TZnODWn+0PrKM0xZo1O7gtJs/6H
X1ZI//og9dLAZTr6zWdevuKK6zFYTpkRdVsKATLjWZ+ogLa8aCLnaV/9SUPWma7h
Z6KrT475RPcQO97AKFtN8lo4kLtD4QDFEhguBsaV5/NXK5TUnVKsILNDiA95uOaB
wfNc7o+COtdin3+rCzovAd5CfoeDlw==
=MLa8
-----END PGP SIGNATURE-----
--- End Message ---
--- Begin Message ---
Source: bedtools
Source-Version: 2.27.1+dfsg-2
We believe that the bug you reported is fixed in the latest version of
bedtools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Liubov Chuprikova <[email protected]> (supplier of updated bedtools
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 22 May 2018 21:31:56 +0200
Source: bedtools
Binary: bedtools bedtools-test
Architecture: source
Version: 2.27.1+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Liubov Chuprikova <[email protected]>
Description:
bedtools - suite of utilities for comparing genomic features
bedtools-test - test data for the bedtools package
Closes: 894781
Changes:
bedtools (2.27.1+dfsg-2) unstable; urgency=medium
.
* Team upload
.
[ Andreas Tille ]
* Install autopkgtest script as /usr/share/doc/bedtools/run-unit-test
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* Drop useless get-orig-source target
.
[ Liubov Chuprikova ]
* Fix "autopkgtest fails while it succeeded in the past"
updated run-unit-test to match new upstream tests
Closes: #894781
Checksums-Sha1:
e8b452336014fee9ff500edd64df4929261e99a9 2164 bedtools_2.27.1+dfsg-2.dsc
458a8b9f76b627549b2fc07514760bd300b8e42b 9372
bedtools_2.27.1+dfsg-2.debian.tar.xz
Checksums-Sha256:
058f26984eff63354fc70fd94149c6770aad3c9f26679cf6cce1c1e19281932f 2164
bedtools_2.27.1+dfsg-2.dsc
7eb858341a493c43c943ca1daaa2d2b917af89a9d0f6c9366388876c40c91259 9372
bedtools_2.27.1+dfsg-2.debian.tar.xz
Files:
560109c71641dc7536b8a3004c964aa7 2164 science optional
bedtools_2.27.1+dfsg-2.dsc
123663beb13b1756007850d97f09a6ae 9372 science optional
bedtools_2.27.1+dfsg-2.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=x/8b
-----END PGP SIGNATURE-----
--- End Message ---
