Your message dated Sat, 18 Aug 2018 06:33:54 +0000 with message-id <[email protected]> and subject line Bug#906454: fixed in biosquid 1.9g+cvs20050121-11 has caused the Debian Bug report #906454, regarding biosquid: FTBFS in buster/sid (ld: cannot find -lsquid) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 906454: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=906454 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:biosquid Version: 1.9g+cvs20050121-10 Severity: serious Tags: ftbfs Dear maintainer: I tried to build this package in buster but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-arch dh build-arch --no-parallel dh_update_autotools_config -a install -d debian/.debhelper/bucket/files cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp mv debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' [... snipped ...] checking for stat64... yes checking for struct stat64... no! checking size of off_t... 8 checking size of off64_t... 0 checking size of fpos_t... 16 configure: configured for optional LFS, large file support configure: enabled optional PVM (Parallel Virtual Machine) support checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Testsuite/Makefile config.status: creating squid.h config.status: creating libsquid.pc config.status: creating squidconf.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode # avoid duplicated definition of PACKAGE_NAME (basically conflicting with hmmer2 when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ squidconf.h make[1]: Leaving directory '/<<BUILDDIR>>/biosquid-1.9g+cvs20050121' dh_auto_build -a make -j1 make[1]: Entering directory '/<<BUILDDIR>>/biosquid-1.9g+cvs20050121' make all-am make[2]: Entering directory '/<<BUILDDIR>>/biosquid-1.9g+cvs20050121' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o afetch_main.o afetch_main.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o afetch afetch_main.o -lsquid -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o afetch afetch_main.o -lsquid -lm /usr/bin/ld: cannot find -lsquid collect2: error: ld returned 1 exit status make[2]: *** [Makefile:790: afetch] Error 1 make[2]: Leaving directory '/<<BUILDDIR>>/biosquid-1.9g+cvs20050121' make[1]: *** [Makefile:642: all] Error 2 make[1]: Leaving directory '/<<BUILDDIR>>/biosquid-1.9g+cvs20050121' dh_auto_build: make -j1 returned exit code 2 make: *** [debian/rules:13: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- The build was made with "dpkg-buildpackage -B" in my autobuilder. Most probably, it also fails here in reproducible builds: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/biosquid.html where you can get a full build log if you need it. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.
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--- Begin Message ---Source: biosquid Source-Version: 1.9g+cvs20050121-11 We believe that the bug you reported is fixed in the latest version of biosquid, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated biosquid package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 18 Aug 2018 08:06:54 +0200 Source: biosquid Binary: biosquid libsquid1 libsquid-dev Architecture: source Version: 1.9g+cvs20050121-11 Distribution: unstable Urgency: medium Maintainer: Debian-Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: biosquid - utilities for biological sequence analysis libsquid-dev - biosquid headers and static library for biological sequence analy libsquid1 - biosquid dynamic library for biological sequence analysis Closes: 906454 Changes: biosquid (1.9g+cvs20050121-11) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.0 * Fix LDADD in Makefile.am Closes: #906454 * d/rules: - Drop --no-parallel - Do not parse d/changelog Checksums-Sha1: 304014521eba53f43fcb3459351634f5478baac1 2199 biosquid_1.9g+cvs20050121-11.dsc 1976d622be69f026def16a1a93bec3caa1e9e1a4 14044 biosquid_1.9g+cvs20050121-11.debian.tar.xz Checksums-Sha256: ae3402e9823765ebf4c8de2bfd9deeccf36142613fc2823ca4cc6d75ac3dafbe 2199 biosquid_1.9g+cvs20050121-11.dsc afd5bc401fff976c2432b1eced7afbc4b97236e00f32691c397c0ebe6f6acb6c 14044 biosquid_1.9g+cvs20050121-11.debian.tar.xz Files: 2e56fd82064187cdaf2d58dbc87dc30d 2199 science optional biosquid_1.9g+cvs20050121-11.dsc 4e01bdb2b6f8623ee5e765b273404d04 14044 science optional biosquid_1.9g+cvs20050121-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlt3uKgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGhIA//c7PvNlonb+jpdfeW2ut6uXp4rRGzOLUV qTKw4zt7RqeYWQKHTln2G/yjTaEB8qML2V7lypGtrjvfiHkMVazxfo5rizYMzSwY ydooZCuyfWmoi96W2f/ha/7XBNWVecpzih6axWbgDP2jlMQd6Qfiz0nHiGdpDmLn mqieDI4TWQHp8io/HSr6cALzIHDXie2Ha+lIhB5W/uCjT+JtHiS65Q4tAa/vqdji 7gvkTil06O9uVU/H0fPkR2ffvUUrCd082gej9nwlM23DvyKxhg5+xfPncFPylSNs 95ETK2lPjRXM/9G5OnsxfKH7xHolwkbOfXuOqo/IaEBE49Pe9LOkHzCMFNKcJq1G FLupFahQ6oHt985Rq01joDs0PI5wqCjK87x+waaBbZO7sivDiVVetY9FsYg51zAR G5BkM9ulqKI318ne6Vpcr9whDBzLQRuC3NMnr8QJ5DxcV0evEf2SAkby10rFy71w m+sSZ9Z1UxT7D6NYHBhgi7w8tHVvuUNW9QMuS+UFOwUL6HFXPNoI65flw5KMfyVk Cz5rHzeCdHe4Aw5cPFnOjj+wNYyaMK14xEBQkSwMRlThMDUStZLMgOjl3phggdk8 ZEMpe35qSqcn6ZiaMLiRwydL1Cv6K2VjwBTdDhJ9TXk07y4s2kwihTTCBQ/jQjlm L9w0cP+RXeA= =JYDj -----END PGP SIGNATURE-----
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