Your message dated Wed, 17 Oct 2018 04:35:00 +0000
with message-id <[email protected]>
and subject line Bug#911119: fixed in pybigwig 0.3.12-1
has caused the Debian Bug report #911119,
regarding pybigwig: Should list python3-all as an explicit test dependency
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
911119: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=911119
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: pybigwig
Version: 0.3.11-1
Severity: minor
Tags: patch
User: [email protected]
Usertags: origin-ubuntu cosmic ubuntu-patch
Hi Diane,
With a recent upload of python-numpy in Ubuntu, the pybigwig autopkgtests
have started to fail:
autopkgtest [18:55:33]: test command2: [-----------------------
bash: python3.7: command not found
autopkgtest [18:55:34]: test command2: -----------------------]
autopkgtest [18:55:34]: test command2: - - - - - - - - - - results - - - - - -
- - - -
command2 FAIL non-zero exit status 127
(https://objectstorage.prodstack4-5.canonical.com/v1/AUTH_77e2ada1e7a84929a74ba3b87153c0ac/autopkgtest-cosmic/cosmic/amd64/p/pybigwig/20181015_185543_80f75@/log.gz)
The reason for this is that pybigwig runs its test suite for all python
versions in the output of py3versions -r, but does not depend on
python3-all, so not all python3 versions are guaranteed to be installed; and
python3.7 is supported currently as a non-default python version in Ubuntu;
and the latest upload of python-numpy specifically drops the dependency on
python3.7, so that it does not force non-default python3 versions to be
installed in order to use python-numpy.
The net result is that this autopkgtest failure may still be currently
masked in Debian for a number of reasons, but it would still be more correct
for pybigwig to declare an explicit test dependency on python3-all.
With this change, the autopkgtest passes locally for me on Ubuntu cosmic.
Thanks for considering,
--
Steve Langasek Give me a lever long enough and a Free OS
Debian Developer to set it on, and I can move the world.
Ubuntu Developer https://www.debian.org/
[email protected] [email protected]
diff -Nru pybigwig-0.3.11/debian/tests/control
pybigwig-0.3.11/debian/tests/control
--- pybigwig-0.3.11/debian/tests/control 2018-07-03 14:50:07.000000000
-0700
+++ pybigwig-0.3.11/debian/tests/control 2018-10-15 13:56:43.000000000
-0700
@@ -12,4 +12,4 @@
; $py test.py
; cd ..
; done
-Depends: python3-pybigwig
+Depends: python3-pybigwig, python3-all
--- End Message ---
--- Begin Message ---
Source: pybigwig
Source-Version: 0.3.12-1
We believe that the bug you reported is fixed in the latest version of
pybigwig, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Diane Trout <[email protected]> (supplier of updated pybigwig package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 15 Oct 2018 21:30:28 -0700
Source: pybigwig
Binary: python-pybigwig python3-pybigwig
Architecture: source
Version: 0.3.12-1
Distribution: unstable
Urgency: medium
Maintainer: Diane Trout <[email protected]>
Changed-By: Diane Trout <[email protected]>
Description:
python-pybigwig - Python 2 module for quick access to bigBed and bigWig files
python3-pybigwig - Python 3 module for quick access to bigBed and bigWig files
Closes: 911119
Changes:
pybigwig (0.3.12-1) unstable; urgency=medium
.
* New upstream release.
* Add python all package to autopkgtest dependencies. (Closes: #911119)
* Update Standards-Version no changes needed
* Add vcs tags
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