Your message dated Thu, 18 Oct 2018 13:36:41 +0000 with message-id <[email protected]> and subject line Bug#909990: fixed in nibabel 2.3.1-1 has caused the Debian Bug report #909990, regarding nibabel: FTBFS (Failed example) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 909990: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=909990 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:nibabel Version: 2.3.0-1 Severity: serious Tags: ftbfs Dear maintainer: I tried to build this package in buster but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-indep dh build-indep --buildsystem=python_distutils --builddirectory=build --with=python2,python3 dh_update_autotools_config -i -O--buildsystem=python_distutils -O--builddirectory=build dh_auto_configure -i -O--buildsystem=python_distutils -O--builddirectory=build dh_auto_configure: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_configure: This feature will be removed in compat 12. debian/rules override_dh_auto_build make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_build dh_auto_build: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_build: This feature will be removed in compat 12. python setup.py build --force Missing optional package "dicom" provided by package "pydicom"; you may get run-time errors running build [... snipped ...] dslice = dslice.astype(out_dtype) ./<<PKGBUILDDIR>>/nibabel/volumeutils.py:818: ComplexWarning: Casting complex values to real discards the imaginary part dslice = dslice.astype(in_cast) ........................................................ ====================================================================== FAIL: Doctest: nibabel.deprecated.FutureWarningMixin ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3.7/doctest.py", line 2198, in runTest raise self.failureException(self.format_failure(new.getvalue())) AssertionError: Failed doctest test for nibabel.deprecated.FutureWarningMixin File "/<<PKGBUILDDIR>>/nibabel/deprecated.py", line 42, in FutureWarningMixin ---------------------------------------------------------------------- File "/<<PKGBUILDDIR>>/nibabel/deprecated.py", line 53, in nibabel.deprecated.FutureWarningMixin Failed example: with warnings.catch_warnings(record=True) as warns: d = D() warns[0].message Expected: FutureWarning("Please, don't use this class",) Got: FutureWarning("Please, don't use this class") ====================================================================== FAIL: nibabel.tests.test_testing.test_clear_and_catch_warnings ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<<PKGBUILDDIR>>/nibabel/tests/test_testing.py", line 89, in test_clear_and_catch_warnings assert_warn_len_equal(my_mod, 1) File "/<<PKGBUILDDIR>>/nibabel/tests/test_testing.py", line 72, in assert_warn_len_equal assert_equal(len(mod_warns), 2) # including 'version' AssertionError: 1 != 2 ---------------------------------------------------------------------- Ran 7721 tests in 68.265s FAILED (SKIP=55, failures=2) make[2]: *** [Makefile:94: unittest] Error 1 make[2]: Leaving directory '/<<PKGBUILDDIR>>' make[1]: *** [debian/rules:43: python-test3.7] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:18: build-indep] Error 2 dpkg-buildpackage: error: debian/rules build-indep subprocess returned exit status 2 -------------------------------------------------------------------------------- The build was made in my autobuilder with "dpkg-buildpackage -A" but it also fails here: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/nibabel.html where you can get a full build log if you need it. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.
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--- Begin Message ---Source: nibabel Source-Version: 2.3.1-1 We believe that the bug you reported is fixed in the latest version of nibabel, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Yaroslav Halchenko <[email protected]> (supplier of updated nibabel package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 17 Oct 2018 23:45:47 -0400 Source: nibabel Binary: python-nibabel python3-nibabel python-nibabel-doc Architecture: source all Version: 2.3.1-1 Distribution: unstable Urgency: medium Maintainer: NeuroDebian Team <[email protected]> Changed-By: Yaroslav Halchenko <[email protected]> Description: python-nibabel - Python bindings to various neuroimaging data formats python-nibabel-doc - documentation for NiBabel python3-nibabel - Python3 bindings to various neuroimaging data formats Closes: 909990 Changes: nibabel (2.3.1-1) unstable; urgency=medium . * Fresh upstream release - should address failures in examples (Closes: #909990) * debian/control * unify Suggests and Recommends between python{3,}-nibabel pkgs: - docs and test helpers are in Suggests, the rest in Recommends Checksums-Sha1: 914777672eaa60ed952769efdaa3bda998c7a413 2543 nibabel_2.3.1-1.dsc 732def013ff6054d95143abaa0e0df2a5091ddfe 4185035 nibabel_2.3.1.orig.tar.gz 2385eaa352ff74522b372d97e12f6368a1567063 8000 nibabel_2.3.1-1.debian.tar.xz baffc7f1aab237c50e516174cd563bb676542e53 9574 nibabel_2.3.1-1_amd64.buildinfo 7db5c5ad2bc45d48399cb281d1146a5bf0e809a1 1488360 python-nibabel-doc_2.3.1-1_all.deb 1a2655e6d54fe9e5cabf3a90aa3da7f5aed3991a 2604940 python-nibabel_2.3.1-1_all.deb 3078fb5fe7dfa2071ca02d6f0ffd0dc3cdc66a7e 2601212 python3-nibabel_2.3.1-1_all.deb Checksums-Sha256: 2baa4fa004dfcda8d5f1ab02f6d61c57db899bc466c62978fa100c9ab0266faf 2543 nibabel_2.3.1-1.dsc d6113fdc7c5c23f7e20ae1846f7d40f92bf20e47f6668680cb5fda7c1a06f330 4185035 nibabel_2.3.1.orig.tar.gz c1d529af695013076bc0513247258c85e1474f7be63a8c2f57ca463904911f4b 8000 nibabel_2.3.1-1.debian.tar.xz f3e3e8ceb4f34989b6553c7b558e7f02a7c781b4d81ec25c8a9afa8959feaf04 9574 nibabel_2.3.1-1_amd64.buildinfo 91ea6ca6c0c3c9a6b0f161dcd82eaee4881f99f0438678b3362a72ef5acde19f 1488360 python-nibabel-doc_2.3.1-1_all.deb 19a98594683cad890189997534462dab41a23eab35d46bd4465472045ca5bc3e 2604940 python-nibabel_2.3.1-1_all.deb 1d005b71127f59c1bff131d1873d8dce21883adb94dca6fd76b3282849c0ee25 2601212 python3-nibabel_2.3.1-1_all.deb Files: 6d30c0dc27535ac1f229579268b5862b 2543 python extra nibabel_2.3.1-1.dsc 371c29cb1464d41b97607a925fc26a64 4185035 python extra nibabel_2.3.1.orig.tar.gz 2ece141f61e9daa3c6bb2ef681527d31 8000 python extra nibabel_2.3.1-1.debian.tar.xz 7e863306a628c34e9e64bf573f687cc2 9574 python extra nibabel_2.3.1-1_amd64.buildinfo e541e54e5b5770ac1b462ab543640e01 1488360 doc extra python-nibabel-doc_2.3.1-1_all.deb 0a2af7231364d9ac5d81eb49ef2ad5f7 2604940 python extra python-nibabel_2.3.1-1_all.deb 7cd439c4f2c16aafc95def76aa762541 2601212 python extra python3-nibabel_2.3.1-1_all.deb -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEExbkF8OjZ/ZZo/zZvot4jUGLaM/oFAlvIhpgACgkQot4jUGLa M/r6gBAAkxz5ecplcZMBsFQSDdjA9gFX5IL7KNY57YDfOwQqkJfHwg6OYXy4z22a rM5vd1vfWW+l9aa/OkJufMYUG5UPuNUvEsaUVY7VSkfyFYkM28sHffqb9YpYQGK4 ss1BYKLywa5DPoPnxnvmtucmmVYxPmRMPF/YSrLL8tTMgHW4zK7KZZGQAkTD6IH0 LKZHp8rXZiKLKBzCvDqpY+Sg8eHYrogN77pNDlL0TKvw2nOmA3rkXDsZbG33NzE/ 7rZojhpenpLbOqfPnB0KBgUlDWyF5VaD0U9EuMRbm0yvvoIdTPK7q0ZQ/dSHHHzS C+Ve9UMqMmiR52s93s5QTWDPJChwR6Cw3WSDD0Q3tud4kxAt23MNSJ0lN6zfDHRX U4H1BpRS9KSb4/pdJInXqyfz4yx9E/MgTxAAiXKBzXJoAWC8P3iLPp4MtJ1sMR0q /Wa7Zq3yFcHo5flEZpoIfrvPy+Sf/ycdfNThEBlRNr9iWAb9TIZ7s6OnVdMc8MEt lBdm8DIuHUnzpzodt8AoXjl6BbIasNGsvEdodIC/kqKtJORX7ESKW/usNmkUNE2D xxKGEg2RzUFLyeX3pbzztQI6H1GExseQrtw92lJc0asZrG47XKOsDSpILcB2qpaF 5bTFb0Pn8rRmyJ7furNoI8T14i/L5VBhyqZt+ZIpvnaJ7laFIBE= =sU4D -----END PGP SIGNATURE-----
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