Your message dated Fri, 19 Oct 2018 07:52:58 +0000 with message-id <[email protected]> and subject line Bug#905387: fixed in spoa 1.1.3-2 has caused the Debian Bug report #905387, regarding spoa: FTBFS in sid to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 905387: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=905387 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:spoa Version: 1.1.3-1 Severity: serious Tags: ftbfs Hello Andreas. I tried to build this package in sid but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON .. -- The CXX compiler identification is GNU 8.2.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features [... snipped ...] - _ZN4spoa19SimdAlignmentEngine10initializeINS_14InstructionSetIsEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS7_EEjjj@Base 1.1.3 +#MISSING: 1.1.3-1# _ZN4spoa19SimdAlignmentEngine10initializeINS_14InstructionSetIiEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS7_EEjjj@Base 1.1.3 +#MISSING: 1.1.3-1# _ZN4spoa19SimdAlignmentEngine10initializeINS_14InstructionSetIsEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS7_EEjjj@Base 1.1.3 _ZN4spoa19SimdAlignmentEngine25align_sequence_with_graphEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 1.1.3 - _ZN4spoa19SimdAlignmentEngine5alignINS_14InstructionSetIiEEEESt6vectorISt4pairIiiESaIS6_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISC_EE@Base 1.1.3 - _ZN4spoa19SimdAlignmentEngine5alignINS_14InstructionSetIsEEEESt6vectorISt4pairIiiESaIS6_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISC_EE@Base 1.1.3 +#MISSING: 1.1.3-1# _ZN4spoa19SimdAlignmentEngine5alignINS_14InstructionSetIiEEEESt6vectorISt4pairIiiESaIS6_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISC_EE@Base 1.1.3 +#MISSING: 1.1.3-1# _ZN4spoa19SimdAlignmentEngine5alignINS_14InstructionSetIsEEEESt6vectorISt4pairIiiESaIS6_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISC_EE@Base 1.1.3 _ZN4spoa19SimdAlignmentEngine7reallocEjjj@Base 1.1.3 _ZN4spoa19SimdAlignmentEngine8preallocEjj@Base 1.1.3 _ZN4spoa19SimdAlignmentEngineC1ENS_13AlignmentTypeEaaa@Base 1.1.3 @@ -66,8 +66,9 @@ _ZNK4spoa5Graph23is_topologically_sortedEv@Base 1.1.3 _ZNK4spoa5Graph38initialize_multiple_sequence_alignmentERSt6vectorIjSaIjEE@Base 1.1.3 _ZNK4spoa5Graph8subgraphEjjRSt6vectorIiSaIiEE@Base 1.1.3 - _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEE@Base 1.1.3 - _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE9_M_rehashEmRKm@Base 1.1.3 +#MISSING: 1.1.3-1# _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEE@Base 1.1.3 + _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE21_M_insert_unique_nodeEmmPNS1_10_Hash_nodeIjLb0EEEm@Base 1.1.3-1 +#MISSING: 1.1.3-1# _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE9_M_rehashEmRKm@Base 1.1.3 _ZNSt11_Deque_baseIjSaIjEE17_M_initialize_mapEm@Base 1.1.3 _ZNSt11_Deque_baseIjSaIjEED1Ev@Base 1.1.3 _ZNSt11_Deque_baseIjSaIjEED2Ev@Base 1.1.3 @@ -86,16 +87,17 @@ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3 _ZNSt6vectorISt10shared_ptrIN4spoa4EdgeEESaIS3_EE17_M_realloc_insertIJRS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 1.1.3 _ZNSt6vectorISt10unique_ptrIN4spoa4NodeESt14default_deleteIS2_EESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3 - _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_@Base 1.1.3 - _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJiRiEEEvDpOT_@Base 1.1.3 - _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 1.1.3 +#MISSING: 1.1.3-1# _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_@Base 1.1.3 +#MISSING: 1.1.3-1# _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJiRiEEEvDpOT_@Base 1.1.3 +#MISSING: 1.1.3-1# _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 1.1.3 + _ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJjjEEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.3-1 _ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb@Base 1.1.3 _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 1.1.3 _ZNSt6vectorIjSaIjEE12emplace_backIJRKiEEEvDpOT_@Base 1.1.3 _ZNSt6vectorIjSaIjEE12emplace_backIJRiEEEvDpOT_@Base 1.1.3 _ZNSt6vectorIjSaIjEE12emplace_backIJRjEEEvDpOT_@Base 1.1.3 - _ZNSt6vectorIjSaIjEE12emplace_backIJiEEEvDpOT_@Base 1.1.3 - _ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 1.1.3 +#MISSING: 1.1.3-1# _ZNSt6vectorIjSaIjEE12emplace_backIJiEEEvDpOT_@Base 1.1.3 +#MISSING: 1.1.3-1# _ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 1.1.3 _ZNSt6vectorIjSaIjEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPjS1_EEmRKj@Base 1.1.3 _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1.3 _ZTIN4spoa15AlignmentEngineE@Base 1.1.3 dh_makeshlibs: failing due to earlier errors make: *** [debian/rules:12: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- The build was made with "dpkg-buildpackage -B" in my autobuilder, but it also fails here: https://buildd.debian.org/status/package.php?p=spoa Thanks.
--- End Message ---
--- Begin Message ---Source: spoa Source-Version: 1.1.3-2 We believe that the bug you reported is fixed in the latest version of spoa, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated spoa package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 19 Oct 2018 09:04:34 +0200 Source: spoa Binary: spoa libspoa1.1.3 libspoa-dev Architecture: source Version: 1.1.3-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: libspoa-dev - SIMD partial order alignment library (development files) libspoa1.1.3 - SIMD partial order alignment library spoa - SIMD partial order alignment tool Closes: 905387 Changes: spoa (1.1.3-2) unstable; urgency=medium . * Fix symbols file Closes: #905387 * Standards-Version: 4.2.1 * Add build-time test * Add autopkgtest Checksums-Sha1: 685bf4f7927f9ec77e3ac66495c361baec7edd4c 2084 spoa_1.1.3-2.dsc 7bef87a7d7362b34b385026ac3b1cf86f9ea8434 5320 spoa_1.1.3-2.debian.tar.xz Checksums-Sha256: 2371d69c992a67ff8cb7427f5c666e21c4464638e80593ebe90e2d4c66e30760 2084 spoa_1.1.3-2.dsc 3af60fdc5a6eb2ccbdb3a508d81ad1c7600ffbda538dbbcd2a9ae58504c3e13e 5320 spoa_1.1.3-2.debian.tar.xz Files: 7c10dfab9c81ae153da8fd46eb6bef4c 2084 science optional spoa_1.1.3-2.dsc 43ac40f034a432ec7b756948d442571f 5320 science optional spoa_1.1.3-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvJg/cRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGg0Q/4mMZBJizC2MZMFu32NQXfIIqBaEP/khB5 pMmCdRaM9stOb3A0tUvCcjBMKrm+KNAhk9qhmiNR1A8o5Huoxo2tqkNaRjg5P1Rk VUU/fNJv+lkTChiLDbqOvnxQjg6ntg2BHxl8fvtzHX8VpwnIodnkWfuw36XMbs1Z ajXstJGhdiCboT9biZEh2d19DO+HaQWZ4QuaXAsBe0v/2e6eAU3mmh/md2hafJcn EfJKEQmTVH1Nfsff8nWipf9MouTDPEKkyrFOZ/X92OSPKIRHbzDsKhR4y4wffJIO jBqAfb/P/LuzT9E7sfdMQ4pI3J09Dc7xHib+JeveJz+DBafEFMoFZxp71sNGiLPO wzs42phPIGgHu4kHAVE6yMGg7aYWKBtp+bOgcAxpeEFqZqb4axdhpjYmOuXKhNlc +GFCUBT38/HA+wawnlyPexZ389jNX0GU3Xij7DfsrRFBd+Z+bGbuWJLWlAJAsk2b 4uW77BVxaWkpc57EZc4jJikDxAjhBpE4JaYkURqUPouLKQEyGkmpllpadEVi6rz3 exeHgSh1wRUCDiJDPV3KsGU9j4zHkZ5xB+dIjA3z6SJjMY5V0SxQgbP3T9Q+CM6a jt0nTUCInBAfpEyARSd15RK1rR7e4EdfKKID9iyn4lykFB7X/St1V6vJjm0Q6g+6 wFrRXswINg== =hq/e -----END PGP SIGNATURE-----
--- End Message ---
