Your message dated Sat, 03 Nov 2018 06:34:35 +0000
with message-id <[email protected]>
and subject line Bug#912662: fixed in mapsembler2 2.2.4+dfsg-3
has caused the Debian Bug report #912662,
regarding mapsembler2: mapsembler_extend not found
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
912662: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=912662
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: mapsembler2
Version: 2.2.4+dfsg-2
Severity: important
Tags: patch
Dear Maintainer,
The run_mapsembler2_pipeline script fails because at line 198 it calls
mapsembler2_extend:
$PATH_TOOLS\mapsembler2_extend $extremities_filename $read_sets -t $t -k $k -c
$c -g $g -x $x -y $y -f $f -i $prefix_index -o $prefix_results
However, the package installs only mapsembler_extend. Packages 2.2.3 from
stable and 2.2.4 from testing are affected.
Symlinking mapsembler2_extend to mapsembler_extend seems to fix this issue.
-- System Information:
Debian Release: buster/sid
APT prefers testing
APT policy: (900, 'testing'), (500, 'oldstable'), (300, 'stable'), (100,
'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 4.18.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8),
LANGUAGE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages mapsembler2 depends on:
ii bc 1.07.1-2+b1
ii libc6 2.27-6
ii libgcc1 1:8.2.0-8
ii libgomp1 8.2.0-8
ii libhdf5-100 1.10.0-patch1+docs-4+b2
ii libstdc++6 8.2.0-8
ii zlib1g 1:1.2.11.dfsg-1
mapsembler2 recommends no packages.
mapsembler2 suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: mapsembler2
Source-Version: 2.2.4+dfsg-3
We believe that the bug you reported is fixed in the latest version of
mapsembler2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated mapsembler2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 03 Nov 2018 07:15:54 +0100
Source: mapsembler2
Binary: mapsembler2
Architecture: source
Version: 2.2.4+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
mapsembler2 - bioinformatics targeted assembly software
Closes: 912662
Changes:
mapsembler2 (2.2.4+dfsg-3) unstable; urgency=medium
.
* Provide mapsembler2_extend as symlink to mapsembler_extend since
it is used in pipeline script (Thanks for the hint to Horacio
Montenegro <[email protected]>)
Closes: #912662
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/copyright
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