Your message dated Sun, 18 Nov 2018 19:51:26 +0000 with message-id <[email protected]> and subject line Bug#913982: fixed in r-base 3.5.1-2 has caused the Debian Bug report #913982, regarding r-base-core: R executable wrapper scripts hard-code the wrong path to sed. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 913982: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=913982 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: r-base-core Version: 3.5.1-1+b2 Severity: important Dear Maintainer, # To reproduce: Attempt to execute on the command line, $ Rscript -e 'message("OK")' or $ R -e 'message("OK")' # Expected result: R starts, prints "OK", and then exits. # Actual result: /usr/lib/R/bin/R: line 193: /usr/bin/sed: No such file or directory ERROR: option '-e' requires a non-empty argument or /usr/bin/R: line 193: /usr/bin/sed: No such file or directory ERROR: option '-e' requires a non-empty argument respectively. # Other notes: The severity is bordering on "grave", but, since it technically does not break *all* usage (including just starting R without arguments), I am flagging it as "important". The problem appears to be on line 122 of /usr/lib/R/bin/R and /usr/bin/R, where between r-base-core 3.5.1-1+b1 and 3.5.1-1+b2, SED=/bin/sed changed to SED=/usr/bin/sed whereas Debian puts the executable in question in /bin/sed . I've grepped through the R-related files for "/usr/bin/sed", and these might be affected: /usr/lib/R/bin/R /usr/lib/R/bin/libtool /usr/lib/R/etc/Renviron.orig /usr/lib/R/etc/Renviron.ucf /usr/bin/R -- System Information: Debian Release: buster/sid APT prefers testing APT policy: (990, 'testing'), (500, 'stable-updates'), (500, 'unstable'), (500, 'stable'), (500, 'oldstable'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 4.18.0-2-amd64 (SMP w/8 CPU cores) Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8), LANGUAGE=en_AU.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages r-base-core depends on: ii ca-certificates 20170717 ii libblas3 [libblas.so.3] 3.8.0-1+b1 ii libbz2-1.0 1.0.6-9 ii libc6 2.27-8 ii libcairo2 1.16.0-1 ii libcurl4 7.61.0-1 ii libgfortran5 8.2.0-9 ii libglib2.0-0 2.58.1-2 ii libgomp1 8.2.0-9 ii libice6 2:1.0.9-2 ii libicu63 63.1-4 ii libjpeg62-turbo 1:1.5.2-2+b1 ii liblapack3 [liblapack.so.3] 3.8.0-1+b1 ii liblzma5 5.2.2-1.3 ii libpango-1.0-0 1.42.4-3 ii libpangocairo-1.0-0 1.42.4-3 ii libpaper-utils 1.1.24+nmu5 ii libpcre3 2:8.39-11 ii libpng16-16 1.6.34-2 ii libquadmath0 8.2.0-9 ii libreadline7 7.0-5 ii libsm6 2:1.2.2-1+b3 ii libtcl8.6 8.6.8+dfsg-4 ii libtiff5 4.0.9+git181026-1 ii libtk8.6 8.6.8-4 ii libx11-6 2:1.6.7-1 ii libxext6 2:1.3.3-1+b2 ii libxss1 1:1.2.3-1 ii libxt6 1:1.1.5-1 ii ucf 3.0038 ii unzip 6.0-21 ii xdg-utils 1.1.3-1 ii zip 3.0-11+b1 ii zlib1g 1:1.2.11.dfsg-1 Versions of packages r-base-core recommends: ii r-base-dev 3.5.1-1 ii r-doc-html 3.5.1-1 ii r-recommended 3.5.1-1 Versions of packages r-base-core suggests: pn ess <none> ii r-base-html 3.5.1-1 pn r-doc-info | r-doc-pdf <none> pn r-mathlib <none> -- no debconf information
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--- Begin Message ---Source: r-base Source-Version: 3.5.1-2 We believe that the bug you reported is fixed in the latest version of r-base, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Dirk Eddelbuettel <[email protected]> (supplier of updated r-base package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 18 Nov 2018 12:46:17 -0600 Source: r-base Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf r-doc-html r-doc-info r-recommended r-base-core-dbg Architecture: source amd64 all Version: 3.5.1-2 Distribution: unstable Urgency: medium Maintainer: Dirk Eddelbuettel <[email protected]> Changed-By: Dirk Eddelbuettel <[email protected]> Description: r-base - GNU R statistical computation and graphics system r-base-core - GNU R core of statistical computation and graphics system r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen r-base-dev - GNU R installation of auxiliary GNU R packages r-base-html - GNU R html docs for statistical computing system functions r-doc-html - GNU R html manuals for statistical computing system r-doc-info - GNU R info manuals statistical computing system r-doc-pdf - GNU R pdf manuals for statistical computing system r-mathlib - GNU R standalone mathematics library r-recommended - GNU R collection of recommended packages [metapackage] Closes: 913982 Changes: r-base (3.5.1-2) unstable; urgency=medium . * Explicit rebuild as 3.1.5-1+b2 appears broken (Closes: #913982) Checksums-Sha1: b606d6c07b2e325a223291c60cc7ee69a49550b9 3008 r-base_3.5.1-2.dsc feda38b8fed70c5380ba46df335c50ebd7310283 88044 r-base_3.5.1-2.debian.tar.xz 6d56f7a578470931e4556ae07bf927a58bcbf646 6638016 r-base-core-dbg_3.5.1-2_amd64.deb 1d3044f7af121e1f4cd6e2f9632a11bac280a884 23924816 r-base-core_3.5.1-2_amd64.deb 026af99c7557990266a5ac726d8db3821b40fb14 4484 r-base-dev_3.5.1-2_all.deb 1495f3d3c60991bd3030c419f7cc3d0df0abdae6 87784 r-base-html_3.5.1-2_all.deb f6ae11c7bc0eb07e1a18f9d4a91f4362852c7178 42040 r-base_3.5.1-2_all.deb 90c64fed73318d0bded28d62bd58978ad8eddd1e 17683 r-base_3.5.1-2_amd64.buildinfo 68b686a76eacfeb3a71dca7c178c2a20018a4938 561484 r-doc-html_3.5.1-2_all.deb 1238ccc2f936159984e4c6c4eb29fce156ab3097 623744 r-doc-info_3.5.1-2_all.deb c735e865f7f935ea11026062dfce5fb687c3c458 9358576 r-doc-pdf_3.5.1-2_all.deb 0b58c19c2abd3f7650ea0c139bdaedc495d80c30 1844420 r-mathlib_3.5.1-2_amd64.deb 06c5cdac0d1dc1634120f3535db1f3cec3b89ce1 2776 r-recommended_3.5.1-2_all.deb Checksums-Sha256: 74157e140ea7bbdf80bb8c7156bf87185ad689b8377dad3898791ed398727b7c 3008 r-base_3.5.1-2.dsc 810e704f128766339d892edba1e09eb0cdbc793ccb924f5a50ab32c6d78c8df9 88044 r-base_3.5.1-2.debian.tar.xz 15b38a56ba19ca43ef5f38fa715bd872954595c7e01bacc43a3421dd6930c779 6638016 r-base-core-dbg_3.5.1-2_amd64.deb 39d49262feeb6fb415ab8706b5cc8d83141b362edad4639dcb15de00b3a56b0d 23924816 r-base-core_3.5.1-2_amd64.deb f31c3e32a2645d54f6a11539be6ac75f3b756f7b456263378abb926310e7db4b 4484 r-base-dev_3.5.1-2_all.deb 7f5f11b0b4f72c5cc7a459c3f759e23e99a59619f47a7b967df5ea621f124387 87784 r-base-html_3.5.1-2_all.deb c51dbb9f6e5e44446bcb3210536bbf54e3889006e8ce967a6c14f6407749ab46 42040 r-base_3.5.1-2_all.deb 14fb7afcf09cda25beef291af366600ad2e5c8c40f65dc99076568cb26acac1d 17683 r-base_3.5.1-2_amd64.buildinfo 9a31d4c896b6c7849560d3a972c7fdc430df2b1d17c7aac32c3a72a057616ae9 561484 r-doc-html_3.5.1-2_all.deb f5996a64c214843836518e2d34e1d2eb4884225821716573e93d7ad1b91ca292 623744 r-doc-info_3.5.1-2_all.deb dddef9e1afdb301fe12ddf58736ad41215a6e4d4f107c9501fb032c71eff74cb 9358576 r-doc-pdf_3.5.1-2_all.deb 1452d4b1eb3c24725a32facd906c7b163cf69eca93b054275280d196ca8cb294 1844420 r-mathlib_3.5.1-2_amd64.deb 0a92f8eccf8f2d79731e0b9517442de4e154257e33c225828e95fb7c0f25289e 2776 r-recommended_3.5.1-2_all.deb Files: 2ca921bc31b57e4e817e298d50f94bac 3008 gnu-r optional r-base_3.5.1-2.dsc 13c3abe7694896113fd517b9d13ca97f 88044 gnu-r optional r-base_3.5.1-2.debian.tar.xz 0df1abe96f38fbbc56a0d4e62cdea5d2 6638016 debug optional r-base-core-dbg_3.5.1-2_amd64.deb 555af985a681c3747612928ee1ea0a3d 23924816 gnu-r optional r-base-core_3.5.1-2_amd64.deb f846196fe031875a40d00aeed7df393d 4484 gnu-r optional r-base-dev_3.5.1-2_all.deb 89cbcf8d34f37e8a316129f2cc796d47 87784 doc optional r-base-html_3.5.1-2_all.deb fe1a890772ce60916f63883fe773f861 42040 gnu-r optional r-base_3.5.1-2_all.deb ff2f152abaff3aad546b6b64accb5390 17683 gnu-r optional r-base_3.5.1-2_amd64.buildinfo 0176ef23631ce73cb71a8654ac098241 561484 doc optional r-doc-html_3.5.1-2_all.deb bd571b2a4c95eebd6d0b048423eaa97a 623744 doc optional r-doc-info_3.5.1-2_all.deb 6e35e28764202c570dcf8a27229a499a 9358576 doc optional r-doc-pdf_3.5.1-2_all.deb b0d75723f92a952230dd874fc025ad54 1844420 gnu-r optional r-mathlib_3.5.1-2_amd64.deb 2503a0d50a151fbb3addfee9171a64b1 2776 gnu-r optional r-recommended_3.5.1-2_all.deb -----BEGIN PGP SIGNATURE----- iQIVAwUBW/G2ZaFIn+KrmaIaAQhPIw//QCWEXmoJbm9rrzMveIo8/Hz8Inwrm80k Ib+b9nwCXWCdDcaQlR1Ur1bnZOJk/HFQPKahEKzkBr/6spKKVGmO9SsZjw/MZg3J P09aogV2tANOOHs/j/wkserdfMakiDGaRORv5p18W5PmxQB6uodBUhxszIDgc2qa WvbE0lifQkrot2+A8yWUiT/CwKH270z0QlOdF+/VHdO+vfKFh6BskevlggmQj9hH 1oY/ULEghkHWVWVDygDMug3uvGu478Ik3DOvD2OQjXO4Ur7D+xxNWrVbIYPXxu6j +jZZzE3kbnhC19kJA0Gdk34M1tOdMIbmiqdUnVyndcLyPKfRJBvTog9vwSz6Xb39 KIfJeekz70TMNk+XXZDokObfyG7tIEaA7+ifPt/8fl9twdQOdm2Fjxov+37j3iyO azTa233eeZaicDAb0ZpjydVfguCRl/cQAUWmlogi2kaCxrsjfgQ0bqU8QCjuX8G5 RUkIrrRNY5Hk0atf7HSFOHeGFvlDy57WDyeAskd9/swdbnC621Brkn7JJxRSHCtF FIWDuHYJ155UvdnY8SNBPVk7+JNnwOFkZriPD4lYMAi2mtyBLL3+A+JYhoT1Yq5F JLxwFrnuY4asXQAZbXuPfv+OJddjrGkfhT0UHiKCf3jSG0dmmBUAy53w/qM8lt1g Upcw53l6bPk= =YSPx -----END PGP SIGNATURE-----
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