Your message dated Fri, 07 Dec 2018 23:34:07 +0000
with message-id <[email protected]>
and subject line Bug#904145: fixed in concavity 0.1+dfsg.1-4
has caused the Debian Bug report #904145,
regarding concavity FTCBFS: uses a C compiler for C++ sources
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
904145: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=904145
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: concavity
Version: 0.1+dfsg.1-2
Tags: patch upstream
User: [email protected]
Usertags: rebootstrap
concavity fails to cross build from source, because it uses a C compiler
for C++ sources. The upstream Makefile assigns CC=g++, which is quite
non-standard. When dh_auto_build overrides CC with a cross C compiler,
things go wrong badly. Renaming CC to the standard CXX variable makes
the build succeed as dh_auto_build passes a C++ compiler there. Please
consider applying the attached patch.
Helmut
--- concavity-0.1+dfsg.1.orig/scripts/Makefile.apps
+++ concavity-0.1+dfsg.1/scripts/Makefile.apps
@@ -74,7 +74,7 @@
$(EXE): $(OBJS) $(LIBDIR)
mkdir -p $(EXE_DIR)
- $(CC) -o $(EXE) $(LDFLAGS) $(USER_OBJS) $(OBJS) $(LIBS)
+ $(CXX) -o $(EXE) $(LDFLAGS) $(USER_OBJS) $(OBJS) $(LIBS)
release:
mkdir -p $(RELEASE_DIR)/apps
--- concavity-0.1+dfsg.1.orig/scripts/Makefile.std
+++ concavity-0.1+dfsg.1/scripts/Makefile.std
@@ -17,7 +17,7 @@
# C flags
#
-CC=g++
+CXX=g++
BASE_CFLAGS=$(USER_CFLAGS) -Wall -I. -I../../pkgs
DEBUG_CFLAGS=$(BASE_CFLAGS) -g
OPT_CFLAGS=$(BASE_CFLAGS) -O3 -DNDEBUG
@@ -52,7 +52,7 @@
.SUFFIXES: .c .C .o
.C.o:
- $(CC) $(CPPFLAGS) $(CFLAGS) -c $<
+ $(CXX) $(CPPFLAGS) $(CFLAGS) -c $<
.c.o:
gcc $(CPPFLAGS) $(CFLAGS) -c $<
--- End Message ---
--- Begin Message ---
Source: concavity
Source-Version: 0.1+dfsg.1-4
We believe that the bug you reported is fixed in the latest version of
concavity, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated concavity package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 08 Dec 2018 00:08:02 +0100
Source: concavity
Binary: concavity
Architecture: source
Version: 0.1+dfsg.1-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
concavity - predictor of protein ligand binding sites from structure and cons
Closes: 904145
Changes:
concavity (0.1+dfsg.1-4) unstable; urgency=medium
.
[ Jelmer Vernooij ]
* Use secure copyright file specification URI.
.
[ Helmut Grohne ]
* Make sure C++ compiler is used for C++ sources
Closes: #904145
.
[ Andreas Tille ]
* Standards-Version: 4.2.1
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