Your message dated Sat, 08 Dec 2018 07:05:01 +0000
with message-id <[email protected]>
and subject line Bug#915853: fixed in toppred 1.10-7
has caused the Debian Bug report #915853,
regarding toppred: reproducible build (usrmerge): embeds path of tool found via 
PATH
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
915853: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=915853
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: toppred
Version: 1.10-6
Severity: normal
Tags: unreproducible patch
User: [email protected]
Usertags: usrmerge

Dear maintainer.

The package toppred currently fails to build reproducibly on
merged-usr vs non-merged systems.

Please see attached patch fixing this issue.

Regards, Andreas Henriksson 
diff -Nru toppred-1.10/debian/changelog toppred-1.10/debian/changelog
--- toppred-1.10/debian/changelog       2018-07-16 11:36:54.000000000 +0200
+++ toppred-1.10/debian/changelog       2018-12-06 21:34:43.000000000 +0100
@@ -1,3 +1,11 @@
+toppred (1.10-6.1) UNRELEASED; urgency=medium
+
+  * Non-maintainer upload.
+  * Explicitly pass paths to configure instead of looking up tools
+    - fixes reproducible builds on merged-usr vs non-merged systems
+
+ -- Andreas Henriksson <[email protected]>  Thu, 06 Dec 2018 21:34:43 +0100
+
 toppred (1.10-6) unstable; urgency=medium
 
   * d/rules: do not parse d/changelog
diff -Nru toppred-1.10/debian/rules toppred-1.10/debian/rules
--- toppred-1.10/debian/rules   2018-07-16 11:36:54.000000000 +0200
+++ toppred-1.10/debian/rules   2018-12-06 21:32:28.000000000 +0100
@@ -11,6 +11,12 @@
 %:
        dh $@
 
+override_dh_auto_configure:
+       dh_auto_configure -- \
+               GREP=/bin/grep \
+               EGREP="/bin/grep -E" \
+               MKDIR_P="/bin/mkdir -p"
+
 override_dh_installexamples:
        make -C test clean
        dh_installexamples

--- End Message ---
--- Begin Message ---
Source: toppred
Source-Version: 1.10-7

We believe that the bug you reported is fixed in the latest version of
toppred, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated toppred package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sat, 08 Dec 2018 07:37:13 +0100
Source: toppred
Binary: toppred
Architecture: source
Version: 1.10-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
 toppred    - transmembrane topology prediction
Closes: 915853
Changes:
 toppred (1.10-7) unstable; urgency=medium
 .
   [ Andreas Henriksson ]
   * Explicitly pass paths to configure instead of looking up tools
     - fixes reproducible builds on merged-usr vs non-merged systems
     Closes: #915853
 .
   [ Andreas Tille ]
   * Standards-Version: 4.2.1
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toppred_1.10-7.dsc
 7fc47fabe00c7d67083a15a1768090a25c41b36751314bb33badaae87fe5b97a 3108 
toppred_1.10-7.debian.tar.xz
Files:
 7908cd7237e71770e7e82de9c0342309 1974 science optional toppred_1.10-7.dsc
 c3b02b10208ec34e53ecfceeb96c7898 3108 science optional 
toppred_1.10-7.debian.tar.xz

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--- End Message ---

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