Your message dated Wed, 19 Dec 2018 21:19:25 +0000 with message-id <[email protected]> and subject line Bug#916800: fixed in phybin 0.3-3 has caused the Debian Bug report #916800, regarding phybin: FTBFS with newer GHC to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 916800: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=916800 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: phybin Version: 0.3-2 Severity: serious Justification: fails to build from source (but built successfully in the past) Dear maintainer, phybin FTBFS with newer versions of GHC (>= 8.4) with the following error: [1 of 9] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o ) Bio/Phylogeny/PhyBin/CoreTypes.hs:112:35: error: Ambiguous occurrence `<>' It could refer to either `Prelude.<>', imported from `Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37 (and originally defined in `GHC.Base') or `Text.PrettyPrint.HughesPJClass.<>', imported from `Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58 (and originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ') | 112 | displayDefaultTree orig = loop tr <> ";" | ^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:120:27: error: Ambiguous occurrence `<>' It could refer to either `Prelude.<>', imported from `Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37 (and originally defined in `GHC.Base') or `Text.PrettyPrint.HughesPJClass.<>', imported from `Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58 (and originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ') | 120 | Just val -> base <> text ":[" <> text (show val) <> text "]" | ^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:120:40: error: Ambiguous occurrence `<>' It could refer to either `Prelude.<>', imported from `Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37 (and originally defined in `GHC.Base') or `Text.PrettyPrint.HughesPJClass.<>', imported from `Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58 (and originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ') | 120 | Just val -> base <> text ":[" <> text (show val) <> text "]" | ^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:120:59: error: Ambiguous occurrence `<>' It could refer to either `Prelude.<>', imported from `Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37 (and originally defined in `GHC.Base') or `Text.PrettyPrint.HughesPJClass.<>', imported from `Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58 (and originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ') | 120 | Just val -> base <> text ":[" <> text (show val) <> text "]" | ^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:121:47: error: Ambiguous occurrence `<>' It could refer to either `Prelude.<>', imported from `Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37 (and originally defined in `GHC.Base') or `Text.PrettyPrint.HughesPJClass.<>', imported from `Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58 (and originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ') | 121 | where base = parens$ sep$ map_but_last (<>text",") $ map loop ls | ^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:126:36: error: Ambiguous occurrence `<>' It could refer to either `Prelude.<>', imported from `Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37 (and originally defined in `GHC.Base') or `Text.PrettyPrint.HughesPJClass.<>', imported from `Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58 (and originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ') | 126 | displayStrippedTree orig = loop tr <> ";" | ^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:130:57: error: Ambiguous occurrence `<>' It could refer to either `Prelude.<>', imported from `Prelude' at Bio/Phylogeny/PhyBin/CoreTypes.hs:7:8-37 (and originally defined in `GHC.Base') or `Text.PrettyPrint.HughesPJClass.<>', imported from `Text.PrettyPrint.HughesPJClass' at Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1-58 (and originally defined in `pretty-1.1.3.6:Text.PrettyPrint.HughesPJ') | 130 | loop (NTInterior _ ls) = parens$ sep$ map_but_last (<>text",") $ map loop ls | ^^ make: *** [/usr/share/cdbs/1/class/hlibrary.mk:147: build-ghc-stamp] Error 1 -- Ilias
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--- Begin Message ---Source: phybin Source-Version: 0.3-3 We believe that the bug you reported is fixed in the latest version of phybin, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated phybin package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Wed, 19 Dec 2018 21:52:54 +0100 Source: phybin Binary: phybin Architecture: source Version: 0.3-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: phybin - binning/clustering newick trees by topology Closes: 916800 Changes: phybin (0.3-3) unstable; urgency=medium . * Add hint to Github in watch file * Add patch to build with ghc-8.6 (Thanks to Joachim Breitner <[email protected]>) Closes: #916800 * Standards-Version: 4.2.1 * Secure URI in copyright format Checksums-Sha1: ba8fec61436f9e4ccba763238bd8ff4b3586deee 2259 phybin_0.3-3.dsc ae6c1b8786e2860f912f29765871e5b3c99c5dc8 6164 phybin_0.3-3.debian.tar.xz 2588f8dd6ec542a3a39b9f82172f387176b9a114 7814 phybin_0.3-3_amd64.buildinfo Checksums-Sha256: ba337265be3933b0f3b2187c7f77753092c24a7954827aae581c31be15937147 2259 phybin_0.3-3.dsc 11c81e9a891f65b82d0650e9c3cafd7ef95f0203b5ed4e6853603d5679d25f76 6164 phybin_0.3-3.debian.tar.xz 56a68ca0cd0362162470fedc2289013e172168ae43d7d494ff4e2c1211a34329 7814 phybin_0.3-3_amd64.buildinfo Files: d00582b7f9bbb46a159e6e2ebbd94564 2259 science optional phybin_0.3-3.dsc 141919731bef8573c8332b89549493bb 6164 science optional phybin_0.3-3.debian.tar.xz 250d650e35ede5ea6b3fa8e134d1e863 7814 science optional phybin_0.3-3_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlwasFQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHGQw/7BTT0qGukrGS96kzkUU5gh++36oCNlRAd k2hB8NQPalscARk7sTI+0BcITupHrkl1TBtNGy2f5bbkgqgY1UeA/qlkgcJbffZl 2dAZCIWkac8uVHSGYxLA+I0ebx0HSJshyCGwvAKDLOh1AL+P06VGguY+Yt/BfyXH iZcycQLW1dB+iImhecDzVr1w/IbYLCJI7qGCNWXr+Jyjo4l1BarxW4oTtXY+AQdB qydTj7prYEUb3cisGpns9mzyMfDIaHvfzbe+L9snz7dgzzzySaINTlf8t/4S2hxN rEO4gg9lCbWmPZmlrBuRdVps6gJGRrd7ABgUBCsC1cmVMtxRWO+eG3KRDhh/MAgt GwIxnB3I92ql6XX+o/fhOwpU4uVJJfF8tLNfaxv1+9NdfF4N896ffNFE+oVeM8MX BLRyardKsjtqDEacz5zrOXPJFNhMN4JUifojRtSTjIEbUTnbP7uyBr065IY4hL7p qV8HAzcBGi3MtI57algOaMRmi/UL781WNPf6R4iCmDARXQ8f5yXInlccBsqHtWUI vw+PmAMrdfybKxi9Dy46g7yWpKzoraFRMjjm4F1bl1D706oGB/0i6PUKBuDqmkHB AFMHinii9uogLYX5FEwYW7pws1MzdxNb6WC8c1ITtPId59+OnbeXSZzsjfvDM1Hp HB6z/qTN+ic= =n4vn -----END PGP SIGNATURE-----
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