Your message dated Wed, 23 Jan 2019 13:51:19 +0000 with message-id <[email protected]> and subject line Bug#920270: fixed in cwltool 1.0.20181217162649+dfsg-10 has caused the Debian Bug report #920270, regarding cwltool autopkg test failures to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 920270: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=920270 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: cwltool Version: 1.0.20181217162649+dfsg-9 Severity: important Tags: sid buster Once the dependency issue is fixed, the following autopkg test errors are seen on all architectures except amd64: ============================= test session starts ============================== platform linux -- Python 3.7.2rc1, pytest-3.6.4, py-1.7.0, pluggy-0.8.0 rootdir: /tmp/autopkgtest.ulzEW2/autopkgtest_tmp, inifile: plugins: xdist-1.25.0, mock-1.7.1, forked-1.0.1 gw0 I gw0 [236] ..sss...ssss.ss......................................................... [ 30%] ............................................................ssssssss..ss [ 61%] ssssssssssssss.........ssss.......sssssssssssss.......ss..............ss [ 91%] ....ssss.s....ssssFF [100%] =================================== FAILURES =================================== ___________ TestUdocker.test_udocker_usage_should_not_write_cid_file ___________ [gw0] linux -- Python 3.7.2 /usr/bin/python3 self = <cwltool.tests.test_udocker.TestUdocker object at 0x7bff7c81a4e0> tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/popen-gw0/test_udocker_usage_should_not_0') def test_udocker_usage_should_not_write_cid_file(self, tmpdir): cwd = tmpdir.chdir() test_file = "tests/wf/wc-tool.cwl" job_file = "tests/wf/wc-job.json" error_code, stdout, stderr = get_main_output( ["--debug", "--default-container", "debian", "--user-space-docker-cmd=" + self.udocker_path, get_data(test_file), get_data(job_file)]) cwd.chdir() cidfiles_count = sum(1 for _ in tmpdir.visit(fil="*.cid")) tmpdir.remove(ignore_errors=True) > assert "completed success" in stderr E assert 'completed success' in "/usr/lib/python3/dist-packages/cwltool/__main__.py 1.0.20181217162649\nResolved '/usr/lib/python3/dist-packages/cwlto...mp/pytest-of-ubuntu/pytest-0/popen-gw0/test_udocker_usage_should_not_0/output\nFinal process status is permanentFail\n" /usr/lib/python3/dist-packages/cwltool/tests/test_udocker.py:54: AssertionError ---------------------------- Captured stdout setup ----------------------------- Info: creating repo: /tmp/tmpba1ihfi1/.udocker Udocker install dir: /tmp/tmpba1ihfi1 ---------------------------- Captured stderr setup ----------------------------- % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 5 278k 5 15543 0 0 28571 0 0:00:09 --:--:-- 0:00:09 28519 100 278k 100 278k 0 0 291k 0 --:--:-- --:--:-- --:--:-- 291k Info: installing 1.1.3 _____________ TestUdocker.test_udocker_should_display_memory_usage _____________ [gw0] linux -- Python 3.7.2 /usr/bin/python3 self = <cwltool.tests.test_udocker.TestUdocker object at 0x7bff7d3bcc88> tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/popen-gw0/test_udocker_should_display_me0') @pytest.mark.skipif(TRAVIS, reason='Not reliable on single threaded test on travis.') def test_udocker_should_display_memory_usage(self, tmpdir): cwd = tmpdir.chdir() error_code, stdout, stderr = get_main_output( ["--enable-ext", "--default-container=debian", "--user-space-docker-cmd=" + self.udocker_path, get_data("tests/wf/timelimit.cwl"), "--sleep_time", "10"]) cwd.chdir() tmpdir.remove(ignore_errors=True) > assert "completed success" in stderr E assert 'completed success' in "/usr/lib/python3/dist-packages/cwltool/__main__.py 1.0.20181217162649\nResolved '/usr/lib/python3/dist-packages/cwlto...imit.cwl] Max memory used: 23MiB\n[job timelimit.cwl] completed permanentFail\nFinal process status is permanentFail\n" /usr/lib/python3/dist-packages/cwltool/tests/test_udocker.py:66: AssertionError =============================== warnings summary =============================== cwltool/tests/test_pack.py::test_pack /usr/lib/python3/dist-packages/cwltool/tests/test_pack.py:29: UnsafeLoaderWarning: The default 'Loader' for 'load(stream)' without further arguments can be unsafe. Use 'load(stream, Loader=ruamel.yaml.Loader)' explicitly if that is OK. Alternatively include the following in your code: import warnings warnings.simplefilter('ignore', ruamel.yaml.error.UnsafeLoaderWarning) In most other cases you should consider using 'safe_load(stream)' expect_packed = yaml.load(packed_file) -- Docs: http://doc.pytest.org/en/latest/warnings.html ======== 2 failed, 171 passed, 63 skipped, 1 warnings in 157.26 seconds ========
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--- Begin Message ---Source: cwltool Source-Version: 1.0.20181217162649+dfsg-10 We believe that the bug you reported is fixed in the latest version of cwltool, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Michael R. Crusoe <[email protected]> (supplier of updated cwltool package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 22 Jan 2019 16:01:42 -0800 Source: cwltool Binary: cwltool Architecture: source Version: 1.0.20181217162649+dfsg-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Michael R. Crusoe <[email protected]> Description: cwltool - Common Workflow Language reference implementation Closes: 920251 920270 Changes: cwltool (1.0.20181217162649+dfsg-10) unstable; urgency=medium . * Make explicit the dependency on python3-mypy-extenions. Closes: #920251, #920270 Checksums-Sha1: 3172a96fa22190fb64bf6590f01cf987eddf0c5b 2617 cwltool_1.0.20181217162649+dfsg-10.dsc 677a4018cc1b6d7a821cdb1c9d0a774e05afb1ee 17124 cwltool_1.0.20181217162649+dfsg-10.debian.tar.xz 1a57ce07d495cfb4581e3f3a4e8cd9c29b437694 7416 cwltool_1.0.20181217162649+dfsg-10_source.buildinfo Checksums-Sha256: 923e18b0123a0477ef3c9fa3e3d2e988f13b95978dc00563561504adaf0113c7 2617 cwltool_1.0.20181217162649+dfsg-10.dsc c6f049fb25ff7a3501226b3f3efaa609cd4f8b04a6edbe1b64cc34aed9a45afa 17124 cwltool_1.0.20181217162649+dfsg-10.debian.tar.xz 62b05463ddbd4398569fec3b7dd7aa688d2480c2a1c2603dc474c4fca4afc9db 7416 cwltool_1.0.20181217162649+dfsg-10_source.buildinfo Files: 7d0574d7d9d2ec236b9afbd69de0021c 2617 science optional cwltool_1.0.20181217162649+dfsg-10.dsc 26a4b514d09036368f27611cba11875e 17124 science optional cwltool_1.0.20181217162649+dfsg-10.debian.tar.xz 54a1ae238c7878af2541f475190c04ef 7416 science optional cwltool_1.0.20181217162649+dfsg-10_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAlxIbB8ACgkQPCZ2P2xn 5uI/mhAAl/SUGq7yiylm2yIkmkSBlXa7ew4ZHigFUYhOTcIGWVfzmgZJsytagJG0 YO8lIFai0A8IulFQULecuSUAjRVReNxIBvLecoZZuBDzO84NZdF1eXID1MHv53qC gX5nTjxcogxf9joP7wvLAtw1Nq13ZXy9LUwdMFJIh0DCRj/PMYWhsurdiUuQv1rk DRrJplgTSTnaYhoaS2jD/2ykOZf5fBcL/5EkC7N+xBsQu4i0VIhzH3cSyFCARwnV 0+/VgApUot7gMR75U1YEyUlNs3nyB0hAMNIzEGMMQL1wqHI84i8W6Uedkk9suVRs QYRBrVDKQk9opkTMMENFFkResCwk96HSXRLmcG8Ncrm3ioJMSe56Giz7BOk8G4PM Ekv6YLWi89bgyWpZCvSNkfJ89GDLQmCV9rp5umfTgblVVAq39Waawdc+eMam0xDx RfF/H2KGh8zDTY8tcBzpvzqVlxFiFSRijDVC+Iy90ARzF+2yLw2l1nlYV3Z9E1p9 id+G+WxkReGmwC1pNBN5LIpvf2iYJ2gY8M0DbUKeYk7vl/Z2Fb6AWOsCN+IwyLC9 KO0TUVmMVsiQfI7wEtJX1O7sUjjSnEPEtf1eMPBZMCjRsVi1uY42+B3ywJ7T50Bm D6FiYpXLJueDj3XDhJo2+Sb4lcv+dGJmXkAMHdRjbVmeAGVTtY4= =15L3 -----END PGP SIGNATURE-----
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