Your message dated Sun, 27 Jan 2019 10:49:28 +0000
with message-id <[email protected]>
and subject line Bug#920591: fixed in lambda-align2 2.0.0-5
has caused the Debian Bug report #920591,
regarding lambda-align2: please make the build reproducible
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
920591: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=920591
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: lambda-align2
Version: 2.0.0-4
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: environment
X-Debbugs-Cc: [email protected]
Hi,
Whilst working on the Reproducible Builds effort [0], we noticed
that lambda-align2 could not be built reproducibly.
This is because the manpages embed the build-time number of CPUs. For example:
-number of threads to run concurrently (ignored if a == skew7ext). In range
[1..160]. Default: \fI16\fP.
+number of threads to run concurrently (ignored if a == skew7ext). In range
[1..150]. Default: \fI15\fP.
Patch attached.
[0] https://reproducible-builds.org/
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
--- a/debian/rules 2019-01-27 08:46:08.070568672 +0100
--- b/debian/rules 2019-01-27 09:15:22.104204459 +0100
@@ -18,6 +18,8 @@
dh $@ --builddirectory=build
override_dh_installman:
+ sed -i -e 's@\(defaults to working directory\.\).*@\1@g'
./debian/lambda-align2/usr/share/man/man1/*.1
+ sed -i -e 's@\(number of threads to run concurrently\.\).*@\1 Default:
autodetected.@g' ./debian/lambda-align2/usr/share/man/man1/*.1
sed -i 's/LAMBDA2 MKINDEXN/LAMBDA2_MKINDEXN/'
./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1
sed -i 's/^lambda2 mkindexn /lambda2_mkindexn /'
./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1
sed -i 's/LAMBDA2 MKINDEXP/LAMBDA2_MKINDEXP/'
./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1
--- End Message ---
--- Begin Message ---
Source: lambda-align2
Source-Version: 2.0.0-5
We believe that the bug you reported is fixed in the latest version of
lambda-align2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated lambda-align2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 27 Jan 2019 11:18:13 +0100
Source: lambda-align2
Binary: lambda-align2
Architecture: source
Version: 2.0.0-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
lambda-align2 - Local Aligner for Massive Biological DatA - v2
Closes: 920591
Changes:
lambda-align2 (2.0.0-5) unstable; urgency=medium
.
* Team upload.
* make the build reproducible (thanks for the patch to
Chris Lamb <[email protected]>)
Closes: #920591
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