Your message dated Fri, 15 Feb 2019 18:34:07 +0000 with message-id <[email protected]> and subject line Bug#922351: fixed in abyss 2.1.5-5 has caused the Debian Bug report #922351, regarding abyss: MPI version not build to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 922351: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=922351 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: abyss Severity: important Hi, something is wrong with the parallel build: $ cat /usr/lib/abyss/ABYSS-P #!/bin/bash echo >&2 "error: ABySS was not configured with support for MPI. For details" echo >&2 " on compiling ABySS with MPI suppor see:" echo >&2 " https://github.com/bcgsc/abyss#compiling-abyss-from-source"; exit 1 Kind regards Andreas. -- System Information: Debian Release: 9.6 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 4.9.0-6-amd64 (SMP w/1 CPU core) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8), LANGUAGE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages abyss depends on: ii libc6 2.24-11+deb9u3 ii libgcc1 1:6.3.0-18+deb9u1 ii libgomp1 6.3.0-18+deb9u1 pn libopenmpi2 <none> ii libsqlite3-0 3.16.2-5+deb9u1 ii libstdc++6 6.3.0-18+deb9u1 ii make 4.1-9.1 ii perl 5.24.1-3+deb9u5 abyss recommends no packages. Versions of packages abyss suggests: pn openmpi-bin <none>
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--- Begin Message ---Source: abyss Source-Version: 2.1.5-5 We believe that the bug you reported is fixed in the latest version of abyss, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Michael R. Crusoe <[email protected]> (supplier of updated abyss package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Fri, 15 Feb 2019 06:23:47 -0800 Source: abyss Architecture: source Version: 2.1.5-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Michael R. Crusoe <[email protected]> Closes: 922351 Changes: abyss (2.1.5-5) unstable; urgency=medium . * Team upload. * Fix MPI build. Closes: #922351 Checksums-Sha1: b8290356893846c4ff0838b9dc8b0a5541a44502 2300 abyss_2.1.5-5.dsc 7d20d4caa4ec7e80db34b14e54e1614a1dc7c485 757532 abyss_2.1.5-5.debian.tar.xz 9c90bc5437d12ba807982d34c43a67b889273aec 7474 abyss_2.1.5-5_source.buildinfo Checksums-Sha256: 378c36b5a4b09ded1e1c9ceb25f8eec51e48d0c252a425e42d5aa40a195186ef 2300 abyss_2.1.5-5.dsc 8ab95bb8892baf5378438ff01dd8764cd241aa1fd9bf0298ea2d2476d08591ba 757532 abyss_2.1.5-5.debian.tar.xz 2b4bed86617e28a2f11b5cd21ca6b29db306f23447b8b57c88dabf2d92c6e230 7474 abyss_2.1.5-5_source.buildinfo Files: 847e5575647c515f70c1d98db6341072 2300 science optional abyss_2.1.5-5.dsc 9d734ede3d7df45fe859ce8801633e3f 757532 science optional abyss_2.1.5-5.debian.tar.xz 9a4f4ea3039475633df80044ec281bdb 7474 science optional abyss_2.1.5-5_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAlxm/6gACgkQPCZ2P2xn 5uIh8w/+JGoU2i6KVhR840C9BFkSbfP0akHY5awN4oa5n2akq+rXN3mhnrEZJdWl 5BKI/18U1rK/Zklx1xpa+mqrz6qSMEx1BMbvoKD6YJ+MQnKlH112bCtYsgXP1vDT NCzQqtdF7gWTXbMkqPfBuRFH6aQqRF/Z64B5sGTjqtcoHbJB84DR62wzO5iB1zlF 34xWp92u8sZaTYDKmaZ8W80qiRTPRmI5+q+MPe6LyVA6rAgNJXTksXaex5jLiDRJ bhhpFC7gkHiOVMXczdz3DxmRqdF0jamlvXtY+QkUOS3aE1ml5+8cfu+Oyfz2YC2j RvzVQJtm7lS16UEva0eiZ/rPxhcYE2cT434bfcfhIIXyjiJ5+O7o+Do1/E2wQ+tl f9YcnueyT8Vb8Hv4x1ay+UgBbkSPg9zaRdJ+2Ir0yVh8X70oxCCIcx0T8x9wu6g2 gX0Z33jr1bAybK9u0K1Q/rCmMG+VPejFAh34IOmpvjSVYbMGMOi+Jb+esFcFnV3o MBePdbDxhKc3YCMRsIPqmi+dYMVlJEPyhOWZ2We362yRTpmnHSt8ZI29m2zzkpA1 kHIQPDxz1SY9nFOddUhEgWJiCXt/R5IhMjrtQO4fNkbn4j7VHt5wwWJPPjhXc8my CmSl309uV5zYUsbJVJzA6PwClX+lrebxB6Y+Q/MXGG5HB8V1ZbU= =aBwP -----END PGP SIGNATURE-----
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