Your message dated Mon, 18 Feb 2019 12:19:06 +0000 with message-id <e1gvht4-000156...@fasolo.debian.org> and subject line Bug#921979: fixed in lmfit-py 0.9.11+dfsg-2 has caused the Debian Bug report #921979, regarding lmfit-py: FTBFS randomly (test_covariance_matrix.test_bounded_parameters fails) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 921979: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=921979 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:lmfit-py Version: 0.9.11+dfsg-1 Severity: serious Tags: ftbfs patch Hello Andreas et al. I tried to build this package in buster but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-indep dh build-indep --with python2,python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<<BUILDDIR>>/lmfit-py-0.9.11+dfsg' dh_auto_build I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/lineshapes.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/models.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/jsonutils.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/__init__.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/printfuncs.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/_ampgo.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/model.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/minimizer.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/parameter.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/confidence.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/_version.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit creating /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit/ui copying lmfit/ui/__init__.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit/ui copying lmfit/ui/ipy_fitter.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit/ui copying lmfit/ui/basefitter.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit/ui UPDATING /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit/_version.py set /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit/_version.py to '0.9.11' I: pybuild pybuild:295: cp -r NIST_STRD /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/lineshapes.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/models.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/jsonutils.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/__init__.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/printfuncs.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/_ampgo.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/model.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/minimizer.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/parameter.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/confidence.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/_version.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit creating /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit/ui copying lmfit/ui/__init__.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit/ui copying lmfit/ui/ipy_fitter.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit/ui copying lmfit/ui/basefitter.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit/ui UPDATING /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit/_version.py set /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit/_version.py to '0.9.11' I: pybuild pybuild:295: cp -r NIST_STRD /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build PYTHONPATH=. http_proxy='localhost' sphinx-build -N -bhtml doc/ build/html # HTML generator Running Sphinx v1.7.9 making output directory... loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/2/objects.inv... loading intersphinx inventory from https://docs.scipy.org/doc/numpy/objects.inv... loading intersphinx inventory from https://docs.scipy.org/doc/scipy/reference/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 14 source files that are out of date updating environment: 14 added, 0 changed, 0 removed reading sources... [ 7%] bounds reading sources... [ 14%] builtin_models reading sources... [ 21%] confidence reading sources... [ 28%] constraints reading sources... [ 35%] contents reading sources... [ 42%] faq reading sources... [ 50%] fitting reading sources... [ 57%] index reading sources... [ 64%] installation reading sources... [ 71%] intro reading sources... [ 78%] model reading sources... [ 85%] parameters reading sources... [ 92%] support reading sources... [100%] whatsnew looking for now-outdated files... none found pickling environment... done checking consistency... /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/doc/contents.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 7%] bounds writing output... [ 14%] builtin_models writing output... [ 21%] confidence writing output... [ 28%] constraints writing output... [ 35%] contents writing output... [ 42%] faq writing output... [ 50%] fitting writing output... [ 57%] index writing output... [ 64%] installation writing output... [ 71%] intro writing output... [ 78%] model writing output... [ 85%] parameters writing output... [ 92%] support writing output... [100%] whatsnew generating indices... genindex writing additional pages... search copying images... [ 5%] _images/models_peak1.png copying images... [ 10%] _images/models_peak2.png copying images... [ 15%] _images/models_peak3.png copying images... [ 21%] _images/models_peak4.png copying images... [ 26%] _images/models_stepfit.png copying images... [ 31%] _images/models_nistgauss.png copying images... [ 36%] _images/models_nistgauss2.png copying images... [ 42%] _images/conf_interval1.png copying images... [ 47%] _images/conf_interval1a.png copying images... [ 52%] _images/conf_interval2.png copying images... [ 57%] _images/emcee_corner.png copying images... [ 63%] _images/emcee_dbl_exp.png copying images... [ 68%] _images/emcee_dbl_exp2.png copying images... [ 73%] _images/model_fit1.png copying images... [ 78%] _images/model_fit4.png copying images... [ 84%] _images/model_fit2.png copying images... [ 89%] _images/model_fit2a.png copying images... [ 94%] _images/model_fit3a.png copying images... [100%] _images/model_fit3b.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warnings. The HTML pages are in build/html. make[1]: Leaving directory '/<<BUILDDIR>>/lmfit-py-0.9.11+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/<<BUILDDIR>>/lmfit-py-0.9.11+dfsg' find .pybuild -name build -type d -exec ln -s /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/examples \{\} \; dh_auto_test I: pybuild base:217: cd /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build; python2.7 -m nose -v tests test_1variable.test_1var ... ok test_NIST_Strd.test_Bennett5 ... ok test_NIST_Strd.test_BoxBOD ... ok test_NIST_Strd.test_Chwirut1 ... ok test_NIST_Strd.test_Chwirut2 ... ok test_NIST_Strd.test_DanWood ... ok test_NIST_Strd.test_ENSO ... ok test_NIST_Strd.test_Eckerle4 ... ok test_NIST_Strd.test_Gauss1 ... ok test_NIST_Strd.test_Gauss2 ... ok test_NIST_Strd.test_Gauss3 ... ok test_NIST_Strd.test_Hahn1 ... ok test_NIST_Strd.test_Kirby2 ... ok test_NIST_Strd.test_Lanczos1 ... ok test_NIST_Strd.test_Lanczos2 ... ok test_NIST_Strd.test_Lanczos3 ... ok test_NIST_Strd.test_MGH09 ... ok test_NIST_Strd.test_MGH10 ... ok test_NIST_Strd.test_MGH17 ... ok test_NIST_Strd.test_Misra1a ... ok test_NIST_Strd.test_Misra1b ... ok test_NIST_Strd.test_Misra1c ... ok test_NIST_Strd.test_Misra1d ... ok test_NIST_Strd.test_Nelson ... ok test_NIST_Strd.test_Rat42 ... ok test_NIST_Strd.test_Rat43 ... ok test_NIST_Strd.test_Roszman1 ... ok test_NIST_Strd.test_Thurber ... ok test_algebraic_constraint.test_constraints1 ... ok add a user-defined function to symbol table ... ok test a constraint with simple function call ... ok test_algebraic_constraint2.test_constraints ... ok Test AMPGO algorithm on Alpine02 function. ... ok Test AMPGO algorithm on Alpine02 function. ... ok test_basicfit.test_basic ... ok Test basinhopping in lmfit versus scipy. ... lmfit/minimizer.py:335: RuntimeWarning: divide by zero encountered in double_scalars self.redchi = self.chisqr / self.nfree ok Test basinhopping in lmfit versus scipy. ... ok Test basinhopping on Alpine02 function. ... ok test_bounded_jacobian.test_bounded_jacobian ... ok test_bounds.test_bounds ... ok test_brute_method.test_brute_lmfit_vs_scipy ... ok test_brute_method.test_brute ... ok test_confidence.test_confidence1 ... ok test_confidence.test_confidence2 ... ok test_copy_params.test_copy_params ... ok test_covariance_matrix.test_bounded_parameters ... FAIL test_covariance_matrix.test_bounds_expression ... ok test_default_kws.test_default_inputs_gauss ... ok test_height_fwhm.test_peak_like ... ok test_itercb.test_itercb ... ok test_least_squares.test_bounds ... ok test_manypeaks_speed.test_manypeaks_speed ... ok test_minimizer.test_scalar_minimize_neg_value ... ok test_aic (test_model.TestComplexConstant) ... ok test_bic (test_model.TestComplexConstant) ... ok test_data_alignment (test_model.TestComplexConstant) ... ok test_explicit_independent_vars (test_model.TestComplexConstant) ... ok test_fit (test_model.TestComplexConstant) ... ok test_fit_with_weights (test_model.TestComplexConstant) ... ok test_result_attributes (test_model.TestComplexConstant) ... ok test_result_eval (test_model.TestComplexConstant) ... ok test_result_eval_custom_x (test_model.TestComplexConstant) ... ok test_result_report (test_model.TestComplexConstant) ... ok test_aic (test_model.TestConstant) ... ok test_bic (test_model.TestConstant) ... ok test_data_alignment (test_model.TestConstant) ... ok test_explicit_independent_vars (test_model.TestConstant) ... SKIP: ConstantModel has not independent_vars. test_fit (test_model.TestConstant) ... ok test_fit_with_weights (test_model.TestConstant) ... ok test_result_attributes (test_model.TestConstant) ... ok test_result_eval (test_model.TestConstant) ... ok test_result_eval_custom_x (test_model.TestConstant) ... SKIP: ConstantModel has not independent_vars. test_result_report (test_model.TestConstant) ... ok test_aic (test_model.TestExponential) ... ok test_bic (test_model.TestExponential) ... ok test_data_alignment (test_model.TestExponential) ... ok test_explicit_independent_vars (test_model.TestExponential) ... ok test_fit (test_model.TestExponential) ... ok test_fit_with_weights (test_model.TestExponential) ... ok test_result_attributes (test_model.TestExponential) ... ok test_result_eval (test_model.TestExponential) ... ok test_result_eval_custom_x (test_model.TestExponential) ... ok test_result_report (test_model.TestExponential) ... ok test_aic (test_model.TestExpression) ... ok test_bic (test_model.TestExpression) ... ok test_composite_with_expression (test_model.TestExpression) ... ok test_data_alignment (test_model.TestExpression) ... ok test_explicit_independent_vars (test_model.TestExpression) ... ok test_fit (test_model.TestExpression) ... ok test_fit_with_weights (test_model.TestExpression) ... ok test_result_attributes (test_model.TestExpression) ... ok test_result_eval (test_model.TestExpression) ... ok test_result_eval_custom_x (test_model.TestExpression) ... ok test_result_report (test_model.TestExpression) ... ok test_aic (test_model.TestLinear) ... ok test_bic (test_model.TestLinear) ... ok test_data_alignment (test_model.TestLinear) ... ok test_explicit_independent_vars (test_model.TestLinear) ... ok test_fit (test_model.TestLinear) ... ok test_fit_with_weights (test_model.TestLinear) ... ok test_result_attributes (test_model.TestLinear) ... ok test_result_eval (test_model.TestLinear) ... ok test_result_eval_custom_x (test_model.TestLinear) ... ok test_result_report (test_model.TestLinear) ... ok test_aic (test_model.TestParabolic) ... ok test_bic (test_model.TestParabolic) ... ok test_data_alignment (test_model.TestParabolic) ... ok test_explicit_independent_vars (test_model.TestParabolic) ... ok test_fit (test_model.TestParabolic) ... ok test_fit_with_weights (test_model.TestParabolic) ... ok test_result_attributes (test_model.TestParabolic) ... ok test_result_eval (test_model.TestParabolic) ... ok test_result_eval_custom_x (test_model.TestParabolic) ... ok test_result_report (test_model.TestParabolic) ... ok test_aic (test_model.TestPolynomialOrder2) ... ok test_bic (test_model.TestPolynomialOrder2) ... ok test_data_alignment (test_model.TestPolynomialOrder2) ... ok test_explicit_independent_vars (test_model.TestPolynomialOrder2) ... ok test_fit (test_model.TestPolynomialOrder2) ... ok test_fit_with_weights (test_model.TestPolynomialOrder2) ... ok test_result_attributes (test_model.TestPolynomialOrder2) ... ok test_result_eval (test_model.TestPolynomialOrder2) ... ok test_result_eval_custom_x (test_model.TestPolynomialOrder2) ... ok test_result_report (test_model.TestPolynomialOrder2) ... ok test_aic (test_model.TestPolynomialOrder3) ... ok test_bic (test_model.TestPolynomialOrder3) ... ok test_data_alignment (test_model.TestPolynomialOrder3) ... ok test_explicit_independent_vars (test_model.TestPolynomialOrder3) ... ok test_fit (test_model.TestPolynomialOrder3) ... ok test_fit_with_weights (test_model.TestPolynomialOrder3) ... ok test_result_attributes (test_model.TestPolynomialOrder3) ... ok test_result_eval (test_model.TestPolynomialOrder3) ... ok test_result_eval_custom_x (test_model.TestPolynomialOrder3) ... ok test_result_report (test_model.TestPolynomialOrder3) ... ok test_aic (test_model.TestPowerlaw) ... ok test_bic (test_model.TestPowerlaw) ... ok test_data_alignment (test_model.TestPowerlaw) ... ok test_explicit_independent_vars (test_model.TestPowerlaw) ... ok test_fit (test_model.TestPowerlaw) ... ok test_fit_with_weights (test_model.TestPowerlaw) ... ok test_result_attributes (test_model.TestPowerlaw) ... ok test_result_eval (test_model.TestPowerlaw) ... ok test_result_eval_custom_x (test_model.TestPowerlaw) ... ok test_result_report (test_model.TestPowerlaw) ... ok test_aic (test_model.TestUserDefiniedModel) ... ok test_bic (test_model.TestUserDefiniedModel) ... ok test_bounding (test_model.TestUserDefiniedModel) ... ok should pass! ... ok test_composite_has_bestvalues (test_model.TestUserDefiniedModel) ... ok Smoke test for composite model fitting with expr constraints. ... ok test_data_alignment (test_model.TestUserDefiniedModel) ... ok test_eval_components (test_model.TestUserDefiniedModel) ... ok test_explicit_independent_vars (test_model.TestUserDefiniedModel) ... ok test_extra_param_issues_warning (test_model.TestUserDefiniedModel) ... ok test_fit (test_model.TestUserDefiniedModel) ... ok test_fit_with_weights (test_model.TestUserDefiniedModel) ... ok test_hints_for_peakmodels (test_model.TestUserDefiniedModel) ... ok test_hints_in_composite_models (test_model.TestUserDefiniedModel) ... ok test_lists_become_arrays (test_model.TestUserDefiniedModel) ... ok test_missing_independent_variable_raises_error (test_model.TestUserDefiniedModel) ... ok test_missing_param_raises_error (test_model.TestUserDefiniedModel) ... ok test_model_name (test_model.TestUserDefiniedModel) ... ok test_model_nan_policy (test_model.TestUserDefiniedModel) ... ok test_model_with_prefix (test_model.TestUserDefiniedModel) ... ok test_param_hint_explicit_value (test_model.TestUserDefiniedModel) ... ok test_result_attributes (test_model.TestUserDefiniedModel) ... ok test_result_eval (test_model.TestUserDefiniedModel) ... ok test_result_eval_custom_x (test_model.TestUserDefiniedModel) ... ok test_result_report (test_model.TestUserDefiniedModel) ... ok test_sum_composite_models (test_model.TestUserDefiniedModel) ... ok test_sum_of_two_gaussians (test_model.TestUserDefiniedModel) ... ok test_user_defined_gaussian_plus_constant (test_model.TestUserDefiniedModel) ... ok test_vary_false (test_model.TestUserDefiniedModel) ... ok test_weird_param_hints (test_model.TestUserDefiniedModel) ... ok test_model_uncertainties.test_linear_constant_intercept ... ok test_model_uncertainties.test_linear_constant_slope ... ok test that dely increases as sigma increases ... ok test that dely increases as expected with changing noise level ... ok test_multidatasets.test_multidatasets ... ok test_diffev_bounds_check (test_nose.CommonMinimizerTest) ... ok test_emcee (test_nose.CommonMinimizerTest) ... ok test_emcee_PT (test_nose.CommonMinimizerTest) ... ok test_emcee_PT_output (test_nose.CommonMinimizerTest) ... ok test_emcee_bounds_length (test_nose.CommonMinimizerTest) ... ok test_emcee_float (test_nose.CommonMinimizerTest) ... ok test_emcee_init_with_chain (test_nose.CommonMinimizerTest) ... ok test_emcee_lnpost (test_nose.CommonMinimizerTest) ... ok test_emcee_multiprocessing (test_nose.CommonMinimizerTest) ... ok test_emcee_output (test_nose.CommonMinimizerTest) ... ok test_emcee_partial_bounds (test_nose.CommonMinimizerTest) ... ok test_emcee_reuse_sampler (test_nose.CommonMinimizerTest) ... ok test_emcee_seed (test_nose.CommonMinimizerTest) ... ok test_nan_policy (test_nose.CommonMinimizerTest) ... capi_return is NULL Call-back cb_calcfc_in__cobyla__user__routines failed. ok test_nan_policy_function (test_nose.CommonMinimizerTest) ... ok test_scalar_minimizers (test_nose.CommonMinimizerTest) ... ok test_nose.test_simple ... ok test_nose.test_lbfgsb ... ok test_nose.test_derive ... ok test_nose.test_peakfit ... ok test_nose.test_scalar_minimize_has_no_uncertainties ... ok test_nose.test_scalar_minimize_reduce_fcn ... ok test_nose.test_multidimensional_fit_GH205 ... ok test of ufloat from uncertainties ... ok test_add_many_params (test_parameters.TestParameters) ... ok test_copy (test_parameters.TestParameters) ... ok test_copy_function (test_parameters.TestParameters) ... ok test_deepcopy (test_parameters.TestParameters) ... ok test_dumps_loads_parameters (test_parameters.TestParameters) ... ok test_expr_and_constraints_GH265 (test_parameters.TestParameters) ... ok test_expr_was_evaluated (test_parameters.TestParameters) ... ok test an expression with bounds, without value ... ok test_isclose (test_parameters.TestParameters) ... ok test_pickle_parameter (test_parameters.TestParameters) ... ok test_pickle_parameters (test_parameters.TestParameters) ... ok test_set_symtable (test_parameters.TestParameters) ... ok test_params_set.test_param_set ... ok test_saveload.test_saveload_model_withdill ... ok test_saveload.test_saveload_model_nodill ... ok test_saveload.test_saveload_modelresult_withdill ... ok test_saveload.test_saveload_modelresult_nodill ... ok test_stepmodel.test_stepmodel_linear ... ok test_stepmodel.test_stepmodel_erf ... ok ====================================================================== FAIL: test_covariance_matrix.test_bounded_parameters ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/tests/test_covariance_matrix.py", line 66, in test_bounded_parameters assert_allclose(result.covar, cov_x, rtol=1e-6) File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", line 1459, in assert_allclose verbose=verbose, header=header, equal_nan=equal_nan) File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", line 796, in assert_array_compare raise AssertionError(msg) AssertionError: Not equal to tolerance rtol=1e-06, atol=0 (mismatch 25.0%) x: array([[ 1.424282e-03, 9.453960e-06, -4.339978e-05, 1.073620e-05], [ 9.453960e-06, 1.841104e-07, -2.905886e-07, 7.191060e-08], [-4.339978e-05, -2.905886e-07, 9.534268e-05, -2.377502e-05], [ 1.073620e-05, 7.191060e-08, -2.377502e-05, 9.609517e-06]]) y: array([[ 1.424282e-03, 9.453960e-06, -4.339979e-05, 1.073621e-05], [ 9.453960e-06, 1.841104e-07, -2.905890e-07, 7.191072e-08], [-4.339979e-05, -2.905890e-07, 9.534270e-05, -2.377504e-05], [ 1.073621e-05, 7.191072e-08, -2.377504e-05, 9.609523e-06]]) ---------------------------------------------------------------------- Ran 222 tests in 30.570s FAILED (SKIP=2, failures=1) E: pybuild pybuild:338: test: plugin distutils failed with: exit code=1: cd /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build; python2.7 -m nose -v tests dh_auto_test: pybuild --test --test-nose -i python{version} -p 2.7 returned exit code 13 make[1]: *** [debian/rules:35: override_dh_auto_test] Error 25 make[1]: Leaving directory '/<<BUILDDIR>>/lmfit-py-0.9.11+dfsg' make: *** [debian/rules:21: build-indep] Error 2 dpkg-buildpackage: error: debian/rules build-indep subprocess returned exit status 2 -------------------------------------------------------------------------------- The build was made in my autobuilder with "dpkg-buildpackage -A" and similar randomness happens here: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/lmfit-py.html If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. On the other hand, if this is a bug in the package itself, and a failure of this test does not really mean that the package is misbuilt or it's not working properly (i.e. flaky test which may not be trusted), then I suggest that the test is simply disabled, as in the patch below. (Warning: the patch is untested). Note: Normally I don't want to use serious severity for things which fail randomly with low probability, but the failure rates I get in this particular case are above 70% and honestly I don't think it would be fair to say that this package "builds from source". If for whatever reason you could not reproduce this easily, please contact me privately and I will gladly offer ssh access to a system where this happens a lot. Thanks. --- a/tests/test_covariance_matrix.py +++ b/tests/test_covariance_matrix.py @@ -26,6 +26,7 @@ def check_paras(para_fit, para_real, sig=3): def test_bounded_parameters(): + return # create data to be fitted np.random.seed(1) x = np.linspace(0, 15, 301)
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--- Begin Message ---Source: lmfit-py Source-Version: 0.9.11+dfsg-2 We believe that the bug you reported is fixed in the latest version of lmfit-py, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 921...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated lmfit-py package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 18 Feb 2019 11:50:01 +0100 Source: lmfit-py Binary: python-lmfit python3-lmfit python-lmfit-doc Architecture: source Version: 0.9.11+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <debian-science-maintain...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: python-lmfit - Least-Squares Minimization with Constraints (Python 2) python-lmfit-doc - Least-Squares Minimization with Constraints (Documentation) python3-lmfit - Least-Squares Minimization with Constraints (Python 3) Closes: 921979 Changes: lmfit-py (0.9.11+dfsg-2) unstable; urgency=medium . * Team upload * Deactivate randomly failing test (thanks for the patch to Santiago Vila <sanv...@debian.org>) Closes: #921979 * Standards-Version: 4.3.0 * Remove build time test results from binary package Checksums-Sha1: fa8d28b785a2accf6e6b744448928881e4ea4da6 2668 lmfit-py_0.9.11+dfsg-2.dsc 27c39c4538422dad05ae89bc959b29f1ea391f3f 5180 lmfit-py_0.9.11+dfsg-2.debian.tar.xz Checksums-Sha256: dd35b49530c196459c8a120acc4fc8bb71dd375aaa6368c48b11e9b8deb5879b 2668 lmfit-py_0.9.11+dfsg-2.dsc e9060dfd7bd14386c341168732d0aed778cb59576cc764fbd55354b5c25a76b6 5180 lmfit-py_0.9.11+dfsg-2.debian.tar.xz Files: 294dcfbb609405f6ee94cb25ad98f710 2668 science optional lmfit-py_0.9.11+dfsg-2.dsc 854d72c07ad74ca7b5a2d77094581ebb 5180 science optional lmfit-py_0.9.11+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlxqnrIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEU9BAAhAjK0hFzESctUIdoajQVdzMh+gZhwRLu tMoygAeffbbqmONXp9+djqDU4VnogNGlBa0rrjkBnbYjOFPWHlYRSnXWwLlCz7BL n5k+lne4k1JHLHXsMKAdsCVLzPwYHewbX9B6abSuP7KNvpwmXtONZelqmZGFcK1y HmcYVxZfN5lG/21GGQ5ozAyjKxB5hiVbseCZhwzcdbbIQ7at2mwd4OIsMNQui3g9 O3AzIpjplKr4dJLhY70K14WcE6CIKNRsin4D5fabR6DRBhcX1UDdhHj61bD35G0d dCDrM8+2gBfUxS8EfRmlQ6N2u0GwipfVo1ET8SN64fJSV+Pq3lTrZjh0x7/wXP8E hGMJFt2bTkyHUjeP42z8g+lm6Bxt31pI1cgYOOW9vkU43ueSM2eo/G3ecAxdeCgL iA3NDb1Xe9xq/HkCKVu3Ax4JOv9bBTbB1/GPpkut7Pp9lcUsBXI9TVwd7LnWEdot wKUM6RZja4MUsPT/vOobKt2JgCx8O/O3tdjvKlAJWD/94r9Pme0Ua3CZ/mEIgaxi kpSj98rOxTsmf/sByP1iPax1GLIh8nu1g20j6eFNWS1Bz14WXcuh7mtJJTXUHwuK DhLwe2kKEqEs/8uxSjPD0GNP5o2SWoSmkKWnadYTCHzQ2LZNkVkSpaRPOl8k8/Hi O7oNW9WvRn0= =RHnO -----END PGP SIGNATURE-----
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