Your message dated Fri, 01 Mar 2019 13:50:06 +0000 with message-id <[email protected]> and subject line Bug#923474: fixed in libbpp-core 2.4.1-3 has caused the Debian Bug report #923474, regarding libbpp-core: FTBFS (dh_makeshlibs fails) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 923474: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=923474 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:libbpp-core Version: 2.4.1-2 Severity: serious Tags: ftbfs Dear maintainer: I tried to build this package in buster but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 8.2.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works [... snipped ...] +#MISSING: 2.4.1-2# _ZNSt6vectorIjSaIjEE9push_backERKj@Base 2.4.1 _ZNSt6vectorImSaImEE17_M_default_appendEm@Base 2.4.1 _ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base 2.4.1 _ZNSt6vectorImSaImEEaSERKS1_@Base 2.4.1 @@ -2225,6 +2232,7 @@ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_@Base 2.4.1 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE7_M_copyINSE_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS8_EPKSI_PSt18_Rb_tree_node_baseRT_@Base 2.4.1 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_mESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 2.4.1 + _ZNSt8_Rb_treeIPN3bpp13GraphObserverES2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE16_M_insert_uniqueIRKS2_EESt4pairISt17_Rb_tree_iteratorIS2_EbEOT_@Base 2.4.1-2 _ZNSt8_Rb_treeIPN3bpp13GraphObserverES2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE7_M_copyINS8_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base 2.4.1 _ZNSt8_Rb_treeIPN3bpp13GraphObserverES2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE7_M_copyINS8_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base 2.4.1 _ZNSt8_Rb_treeIPN3bpp13GraphObserverES2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.4.1 @@ -2267,16 +2275,17 @@ _ZNSt8_Rb_treeIjSt4pairIKjS0_IjjEESt10_Select1stIS3_ESt4lessIjESaIS3_EEaSERKS9_@Base 2.4.1 _ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE12_M_erase_auxESt23_Rb_tree_const_iteratorIS2_E@Base 2.4.1 (optional)_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSA_PSt13_Rb_tree_nodeIS2_E@Base 2.4.1 - (optional)_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE16_M_insert_uniqueIS0_IjjEEES0_ISt17_Rb_tree_iteratorIS2_EbEOT_@Base 2.4.1 +#MISSING: 2.4.1-2# (optional)_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE16_M_insert_uniqueIS0_IjjEEES0_ISt17_Rb_tree_iteratorIS2_EbEOT_@Base 2.4.1 (optional)_ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE17_M_emplace_uniqueIJS0_IjjEEEES0_ISt17_Rb_tree_iteratorIS2_EbEDpOT_@Base 2.4.1 _ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.4.1 _ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 2.4.1 _ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE7_M_copyINS8_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base 2.4.1 _ZNSt8_Rb_treeIjSt4pairIKjjESt10_Select1stIS2_ESt4lessIjESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.4.1 _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueIRKjEESt4pairISt17_Rb_tree_iteratorIjEbEOT_@Base 2.4.1 - _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE5eraseERKj@Base 2.4.1 +#MISSING: 2.4.1-2# _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE5eraseERKj@Base 2.4.1 _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE8_M_eraseEPSt13_Rb_tree_nodeIjE@Base 2.4.1 _ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSD_PSt13_Rb_tree_nodeIS5_E@Base 2.4.1 + _ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOmEESG_IJEEEEESt17_Rb_tree_iteratorIS5_ESt23_Rb_tree_const_iteratorIS5_EDpOT_@Base 2.4.1-2 _ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE24_M_get_insert_unique_posERS1_@Base 2.4.1 _ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base 2.4.1 _ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE7_M_copyINSB_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS5_EPKSF_PSt18_Rb_tree_node_baseRT_@Base 2.4.1 @@ -2284,6 +2293,7 @@ _ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E@Base 2.4.1 _ZNSt8_Rb_treeImSt4pairIKmSt6vectorIdSaIdEEESt10_Select1stIS5_ESt4lessImESaIS5_EEaSERKSB_@Base 2.4.1 _ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSG_PSt13_Rb_tree_nodeIS8_E@Base 2.4.1 + _ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOsEESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 2.4.1-2 _ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 2.4.1 _ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE24_M_get_insert_unique_posERS1_@Base 2.4.1 _ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_@Base 2.4.1 dh_makeshlibs: failing due to earlier errors make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:10: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- (The above is just how the build ends and not necessarily the most relevant part) The build was made in my autobuilder with "dpkg-buildpackage -B". I've also triggered rebuilds here: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libbpp-core.html where you will be able to get a full build log if you need it. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.
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--- Begin Message ---Source: libbpp-core Source-Version: 2.4.1-3 We believe that the bug you reported is fixed in the latest version of libbpp-core, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated libbpp-core package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 01 Mar 2019 14:16:27 +0100 Source: libbpp-core Binary: libbpp-core-dev libbpp-core4 Architecture: source Version: 2.4.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: libbpp-core-dev - Bio++ Core library development files libbpp-core4 - Bio++ Core library Closes: 923474 Changes: libbpp-core (2.4.1-3) unstable; urgency=medium . * More sensible way to provide symbols amd64 only * Rebuild for new version of gcc to fix symbols Closes: #923474 * Standards-Version: 4.3.0 Checksums-Sha1: a46f6020f9d28db98d7913ca3147a6de530fbafe 2114 libbpp-core_2.4.1-3.dsc d5392de0d3706aed1df04c88932db2d6359ded79 32528 libbpp-core_2.4.1-3.debian.tar.xz Checksums-Sha256: 7a0c5c29fd46dd20d25fffbbdc0722472a4f932fc2cc4957e5ade46f1aedda94 2114 libbpp-core_2.4.1-3.dsc c595aad8040ae306ec481bef08d53cdde7846633ce2f3301da93239d9dfdca96 32528 libbpp-core_2.4.1-3.debian.tar.xz Files: ead32decf1d62e45cd0c4bc4f5dd7a26 2114 science optional libbpp-core_2.4.1-3.dsc 9f1ffc0076a9b091273b36977f7f6624 32528 science optional libbpp-core_2.4.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlx5NDkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF63w//bnE/i1gLMpTUYnLFKqufayPQnol4mEnw U2SG3FTTL47Gj6EggLblD4+SBbiILqtVMhuxpTW5nOF+ck+hiALCmcC0npEV/bZG 3AY1Qo/XNvVAmCAOHrZrq95MIjBDIs7xrClDrw5yCCIB++Qi38YxbFNVE4nvrM9E 5eFL7aTALO/J3XKhxh1zCXMrC+kCu9dEn33b648geE/2PRgNEaFfO/vN6tfWMNzf I5RvjhPR8TVrjvNCptn4y6Rt3l2IWno3zdgGGtEkD9XSbM0jw/rUgOx9NDCQ/NHD QPH0+QPfmz1uBYI+D7JCz2w0Up2soFerSd8qoHf95GWeERk7B+ZgY8rs0WYgD3p7 UYZko6915YJcAudgfenVD0S/Xv1RTvaEQxu+FCVqL9Z4F/QB/WBj67W39/haEHGD 70qBC3fNkRSPvlF9Q4XQFE9pRqDgx3AlXTFHvPBPJtSLN3+QdiAYtV9uPgJpAx39 B4wREc72bprlEp8zV/IIVQkdjtPVsMCssHXBGuvjNEYzaSl0a+pLljWpudCi1R9f n4TN/qejl/LU6BgwPtRH9L+2zyYGEQkFs6VamF2nHdlKb5y26FuzNEj6uSCd3TbZ eBCf6ur3L5aV7Z1deLP2tUYMMRHdhJ8n7MJ1CngrDXPakb+mVEp9P1wVt7khOy5t 0UfsOaDgS9o= =KFaJ -----END PGP SIGNATURE-----
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