Your message dated Fri, 01 Mar 2019 21:20:16 +0000 with message-id <[email protected]> and subject line Bug#923457: fixed in libbpp-phyl 2.4.1-2 has caused the Debian Bug report #923457, regarding libbpp-phyl: FTBFS (dh_makeshlibs fails) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 923457: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=923457 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:libbpp-phyl Version: 2.4.1-1 Severity: serious Tags: ftbfs Dear maintainer: I tried to build this package in buster but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 8.2.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info [... snipped ...] _ZTTN3bpp9LLG08_UL3E@Base 2.4.1 _ZTTN3bpp9RE08CodonE@Base 2.4.1 _ZTVN3bpp10BppBooleanE@Base 2.4.1 - _ZTVN3bpp11IOExceptionE@Base 2.4.1 +#MISSING: 2.4.1-1# _ZTVN3bpp11IOExceptionE@Base 2.4.1 _ZTVN3bpp11LG10_EX_EHO13EmbeddedModelE@Base 2.4.1 _ZTVN3bpp11LG10_EX_EHOE@Base 2.4.1 _ZTVN3bpp11NaNListenerE@Base 2.4.1 @@ -6100,7 +6133,7 @@ _ZTVN3bpp23IODistanceMatrixFactoryE@Base 2.4.1 _ZTVN3bpp23IOFrequenciesSetFactoryE@Base 2.4.1 _ZTVN3bpp23MarkovModulatedStateMapE@Base 2.4.1 - _ZTVN3bpp23NotImplementedExceptionE@Base 2.4.1 +#MISSING: 2.4.1-1# _ZTVN3bpp23NotImplementedExceptionE@Base 2.4.1 _ZTVN3bpp24BppOFrequenciesSetFormatE@Base 2.4.1 _ZTVN3bpp24CladogramDrawBranchEventE@Base 2.4.1 _ZTVN3bpp24ConstantRateDistributionE@Base 2.4.1 @@ -6117,12 +6150,12 @@ _ZTVN3bpp24TripletSubstitutionModelE@Base 2.4.1 _ZTVN3bpp24TsTvSubstitutionRegisterE@Base 2.4.1 _ZTVN3bpp25AbstractSubstitutionModelE@Base 2.4.1 - _ZTVN3bpp25AlphabetMismatchExceptionE@Base 2.4.1 +#MISSING: 2.4.1-1# _ZTVN3bpp25AlphabetMismatchExceptionE@Base 2.4.1 _ZTVN3bpp25BppOMultiTreeReaderFormatE@Base 2.4.1 _ZTVN3bpp25BppOMultiTreeWriterFormatE@Base 2.4.1 _ZTVN3bpp25BppOTransitionModelFormatE@Base 2.4.1 _ZTVN3bpp25FullProteinFrequenciesSetE@Base 2.4.1 - _ZTVN3bpp25IndexOutOfBoundsExceptionE@Base 2.4.1 +#MISSING: 2.4.1-1# _ZTVN3bpp25IndexOutOfBoundsExceptionE@Base 2.4.1 _ZTVN3bpp25MixedSubstitutionModelSetE@Base 2.4.1 _ZTVN3bpp25PropertyNotFoundExceptionE@Base 2.4.1 _ZTVN3bpp25SequenceNotFoundExceptionE@Base 2.4.1 @@ -8891,6 +8924,7 @@ _ZTv0_n416_NK3bpp20AbstractWrappedModel17getFrequenciesSetEv@Base 2.4.1 _ZTv0_n416_NK3bpp20ConstantDistribution13getUpperBoundEv@Base 2.4.1 _ZTv0_n416_NK3bpp22AbstractTreeLikelihood16getNumberOfSitesEv@Base 2.4.1 + _ZTv0_n416_NK3bpp24AlignedSequenceContainer16getNumberOfSitesEv@Base 2.4.1-1 _ZTv0_n416_NK3bpp24OneChangeTransitionModel17getFrequenciesSetEv@Base 2.4.1 _ZTv0_n416_NK3bpp27CodonAdHocSubstitutionModel17getFrequenciesSetEv@Base 2.4.1 _ZTv0_n416_NK3bpp28AbstractDiscreteDistribution13getUpperBoundEv@Base 2.4.1 dh_makeshlibs: failing due to earlier errors make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:10: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- The build was made in my autobuilder with "dpkg-buildpackage -A" and it also fails here: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libbpp-phyl.html If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.
--- End Message ---
--- Begin Message ---Source: libbpp-phyl Source-Version: 2.4.1-2 We believe that the bug you reported is fixed in the latest version of libbpp-phyl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated libbpp-phyl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 01 Mar 2019 15:52:37 +0100 Source: libbpp-phyl Binary: libbpp-phyl-dev libbpp-phyl12 Architecture: source Version: 2.4.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: libbpp-phyl-dev - Bio++ Phylogenetic library development files libbpp-phyl12 - Bio++ Phylogenetic library Closes: 923457 Changes: libbpp-phyl (2.4.1-2) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. . [ Michael R. Crusoe ] * libbpp-phyl-dev: Multi-Arch: same & add missing ${devlibs:Depends} * Remove trailing whitespace in debian/copyright * Standards-Version: 4.3.0 . [ Andreas Tille ] * Adapt symbols to new gcc version Closes: #923457 * More sensible way to provide symbols amd64 only Checksums-Sha1: 5c557f140bece607fd6a0f858b2f15547dfaa791 2153 libbpp-phyl_2.4.1-2.dsc 147aed5a92a73699cee78183dcc55527a6a8b95c 56412 libbpp-phyl_2.4.1-2.debian.tar.xz Checksums-Sha256: 531ff5be3fd1a5c6eabfa00f299683c3eda855d767885e36449935c4f2100b6b 2153 libbpp-phyl_2.4.1-2.dsc 326fc2496311edf955b939db10ac187c6d588c40004949d391fdf29cb4250173 56412 libbpp-phyl_2.4.1-2.debian.tar.xz Files: 7a58eaebefe331a041f38c6ce00fb32d 2153 science optional libbpp-phyl_2.4.1-2.dsc a8f30a7343ed504f58d1cbf465e58d58 56412 science optional libbpp-phyl_2.4.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlx5ah4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE8yA/6Aq37o17CzTZQylilazrls2pLpGs9f+AL HMGGFG6zdw/xc0lraX5a+rZpNhpArRlH77hZTYf6PTVqYV0n7xrdSThw/is2b5+W zH0jpqjRRhzCq21svrMvvRHj14o5E3iJRdq7f666cChiwc/YDKB3hDViwVpHfGCC MjK8K+IsKZcE3CV+696f6jvub3ChmbEiu58gicnhHFJzkZsyMvVCD0Boeivyk2m/ 6kdh/iejQYKrSbRUTMfKlj4U3xd6Tk7R0YAYFSy6X/fE0Wm6qDOEdWKmCkjVQgMy +JyMigBrFB5PYvP0xnP6Q3zE4Kh5NRGPpMIRB5ogR+s/0rt5U5TddJiZqt5eSkN9 HW1E9gDFLCzJjNRd190KWMT7WdoaDkHO8I4CCArk6e3PaOHOW8shXcwPyXzpYdIX lb+/OY4k8Kxumaexu+lkGMT4oeBNCgcUrdu8DP2E7+U7oecNjRdhaXsKNSXvcAtI qouOHUT0oD1JO+4GHonML5Dme0jEmoneEck1Z/dZx4KNyvFD40KPFp3QPZJre90+ PXtTXlctjlQMiVr6vfhxnJPmSndyhJ6YdCnTSHpL4j64LvFjj52vY0Zpr6MkQKBY OrGWztw1RCVyxQim/OwukgG43Rc5yYnasGC3R5KKh9quCJylzweLiNfJJ/9jqtqE hxsP6MHZuLk= =ES+a -----END PGP SIGNATURE-----
--- End Message ---
