Your message dated Mon, 13 May 2019 07:03:26 +0000
with message-id <[email protected]>
and subject line Bug#928856: fixed in pirs 2.0.2+dfsg-8
has caused the Debian Bug report #928856,
regarding pirs FTCBFS: does not pass cross tools to plain make
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
928856: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=928856
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: pirs
Version: 2.0.2+dfsg-7
Tags: patch
User: [email protected]
Usertags: rebootstrap
pirs fails to cross build from source, because it does not pass cross
tools to make while building src/stator/gcContCvgBias. The easiest way
of fixing that - using dh_auto_build - does not quite work, because that
Makefile expects the C++ compiler in CC, but dh_auto_build supplies a C
compiler there. It has to be renamed as well. Please consider applying
the attached patch.
Helmut
diff --minimal -Nru pirs-2.0.2+dfsg/debian/changelog
pirs-2.0.2+dfsg/debian/changelog
--- pirs-2.0.2+dfsg/debian/changelog 2018-09-27 21:35:39.000000000 +0200
+++ pirs-2.0.2+dfsg/debian/changelog 2019-05-12 09:51:09.000000000 +0200
@@ -1,3 +1,12 @@
+pirs (2.0.2+dfsg-7.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix FTCBFS: (Closes: #-1)
+ + Let dh_auto_build pass cross tools to make.
+ + Pass C++ compiler as CC.
+
+ -- Helmut Grohne <[email protected]> Sun, 12 May 2019 09:51:09 +0200
+
pirs (2.0.2+dfsg-7) unstable; urgency=medium
* debhelper 11
diff --minimal -Nru pirs-2.0.2+dfsg/debian/rules pirs-2.0.2+dfsg/debian/rules
--- pirs-2.0.2+dfsg/debian/rules 2018-09-27 21:35:39.000000000 +0200
+++ pirs-2.0.2+dfsg/debian/rules 2019-05-12 09:51:09.000000000 +0200
@@ -34,7 +34,7 @@
override_dh_auto_build:
dh_auto_build
- cd src/stator/gcContCvgBias && make
+ dh_auto_build --sourcedirectory=src/stator/gcContCvgBias -- CC='$$(CXX)'
override_dh_auto_install:
dh_auto_install --sourcedirectory=src/stator/gcContCvgBias
--- End Message ---
--- Begin Message ---
Source: pirs
Source-Version: 2.0.2+dfsg-8
We believe that the bug you reported is fixed in the latest version of
pirs, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Helmut Grohne <[email protected]> (supplier of updated pirs package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 12 May 2019 09:51:09 +0200
Source: pirs
Binary: pirs pirs-profiles pirs-examples
Architecture: source
Version: 2.0.2+dfsg-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Helmut Grohne <[email protected]>
Description:
pirs - Profile based Illumina pair-end Reads Simulator
pirs-examples - profile basd Illumina pair-end Reads Simulator (example data)
pirs-profiles - profile basd Illumina pair-end Reads Simulator (profile data)
Closes: 928856
Changes:
pirs (2.0.2+dfsg-8) unstable; urgency=medium
.
* Team upload.
* Fix FTCBFS: (Closes: #928856)
+ Let dh_auto_build pass cross tools to make.
+ Pass C++ compiler as CC.
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