Your message dated Sun, 21 Jul 2019 23:08:05 +0000
with message-id <[email protected]>
and subject line Bug#932652: fixed in cd-hit 4.8.1-2
has caused the Debian Bug report #932652,
regarding cd-hit FTCBFS: unconventional compiler variable
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
932652: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=932652
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: cd-hit
Version: 4.6.8-2
Tags: patch
User: [email protected]
Usertags: ftcbfs
cd-hit fails to cross build from source, because the upstream Makefile
stores the C++ compiler in the variable CC while dh_auto_build passes a
C compiler there. Please consider applying the attached patch.
Helmut
diff --minimal -Nru cd-hit-4.6.8/debian/changelog cd-hit-4.6.8/debian/changelog
--- cd-hit-4.6.8/debian/changelog 2018-09-19 14:47:50.000000000 +0200
+++ cd-hit-4.6.8/debian/changelog 2019-07-21 17:52:27.000000000 +0200
@@ -1,3 +1,10 @@
+cd-hit (4.6.8-2.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix FTCBFS: Makefile expects a C++ compiler in $CC. (Closes: #-1)
+
+ -- Helmut Grohne <[email protected]> Sun, 21 Jul 2019 17:52:27 +0200
+
cd-hit (4.6.8-2) unstable; urgency=medium
* debhelper 11
diff --minimal -Nru cd-hit-4.6.8/debian/rules cd-hit-4.6.8/debian/rules
--- cd-hit-4.6.8/debian/rules 2018-09-19 14:47:50.000000000 +0200
+++ cd-hit-4.6.8/debian/rules 2019-07-21 17:52:26.000000000 +0200
@@ -18,7 +18,7 @@
dh $@
override_dh_auto_build:
- dh_auto_build -- openmp=yes
+ dh_auto_build -- openmp=yes CC='$$(CXX)'
override_dh_installman:
mkdir -p $(mandir)
--- End Message ---
--- Begin Message ---
Source: cd-hit
Source-Version: 4.8.1-2
We believe that the bug you reported is fixed in the latest version of
cd-hit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated cd-hit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 22 Jul 2019 00:42:22 +0200
Source: cd-hit
Binary: cd-hit
Architecture: source
Version: 4.8.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
cd-hit - suite of programs designed to quickly group sequences
Closes: 932652
Changes:
cd-hit (4.8.1-2) unstable; urgency=medium
.
[ Helmut Grohne ]
* Fix FTCBFS: Makefile expects a C++ compiler in $CC. (Closes: #932652)
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