Your message dated Sun, 01 Sep 2019 18:38:45 +0000 with message-id <[email protected]> and subject line Bug#936049: fixed in odb-api 0.18.1-7 has caused the Debian Bug report #936049, regarding metview: missing libopenmpi-dev dependency? to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 936049: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=936049 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: odb-api Version: 0.18.1-6 Severity: serious tags: patch Hello, looks like for some reasons eckit in Ubuntu fails to see the include directory for openmpi, because it simply doesn't exist adding libopenmpi-dev dependency to odb-api should fix the issue, bringing the directory back when cmake tries to find header files /usr/lib/x86_64-linux-gnu/pkgconfig/odb.pc:ODB_CC=/usr/bin/cc -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -fopenmp -fPIC -I${prefix}/include /usr/lib/x86_64-linux-gnu/cmake/odb/odb-import.cmake:set(ODB_ENVIRONMENT "ODB_ROOT=/usr;ODB_SYSPATH=/usr/include;ODB_BINPATH=/usr/bin;ODB_BEBINPATH=/usr/bin;ODB_FEBINPATH=/usr/bin;ODB_LIBPATH=/usr/lib;ODB_RTABLE_PATH=/usr/share/odb;ODB_SYSDBPATH=/usr/share/odb;ODB_CC=/usr/bin/cc -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -Wdate-time -D_FORTIFY_SOURCE=2 -pipe -fopenmp -fPIC -I/usr/include;ODB_F90=/usr/bin/gfortran -g -O2 -fdebug-prefix-map=/build/odb-api=. -fstack-protector-strong -fopenmp -fPIC -ffree-line-length-none -I/usr/include -I/usr/module -I/usr/odb/module;ODB_COMPILER=/usr/bin/odb98.x -V -O3;ODB_COMPILER_FLAGS=/usr/share/odb/odb98.flags;ODB_STATIC_LINKING=1;ODB_LD_SHARED=none;ODB_LD_SHARED_SFX=.so;ODB_IOASSIGN_MAXPROC=32;ODB_IOASSIGN_PARAMS=-r 1m -w 1m;ODB_AR=/usr/bin/ar;ODB_GZIP=/bin/gzip;ODB_GUNZIP=/bin/gunzip;ODB_SETUP_SHELL=/bin/sh") it looks like used and needed snip of the failing log: -- The following OPTIONAL packages have not been found: * Git * fckit (required version >= 0.6.2) * transi (required version >= 0.4.4) * CGAL * gridtools_storage -- ENABLE_EXPOSE_SUBPACKAGES is On: -- All packages in the bundle will be installed at the same level into: -- /usr -- Configuring done CMake Error in atlas/src/atlas/CMakeLists.txt: Imported target "eckit_mpi" includes non-existent path "/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi" in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include: * The path was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and references files it does not provide. CMake Error in atlas/src/atlas/CMakeLists.txt: Imported target "eckit_mpi" includes non-existent path "/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi" in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include: * The path was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and references files it does not provide. trivial patch here: https://launchpad.net/ubuntu/+source/odb-api/0.18.1-6ubuntu1 Gianfranco
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--- Begin Message ---Source: odb-api Source-Version: 0.18.1-7 We believe that the bug you reported is fixed in the latest version of odb-api, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Alastair McKinstry <[email protected]> (supplier of updated odb-api package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 01 Sep 2019 17:48:13 +0100 Source: odb-api Architecture: source Version: 0.18.1-7 Distribution: unstable Urgency: medium Maintainer: Alastair McKinstry <[email protected]> Changed-By: Alastair McKinstry <[email protected]> Closes: 936049 Changes: odb-api (0.18.1-7) unstable; urgency=medium . * Add libopenmpi-dev runtime dependency, to help cmake find libeckit_mpi include directories. Closes: #936049 Checksums-Sha1: 87c4663f92e6b53a38025cc172854e07cf2004c3 2619 odb-api_0.18.1-7.dsc 41dc3369e35fd7cac3684fcde67842e5d2aece66 20688 odb-api_0.18.1-7.debian.tar.xz Checksums-Sha256: 25527bd2e3ea65e423f2490fece62574cd7dee9c8156706a467d3198895f879b 2619 odb-api_0.18.1-7.dsc c55af74ce3138cdc0f8b7c82be75a38587f9f4a3615c8ecc3106418f6d865b4d 20688 odb-api_0.18.1-7.debian.tar.xz Files: 94d2c5b910a08f8c61b4e6192911edcb 2619 utils optional odb-api_0.18.1-7.dsc 3f2684da816aa19fe2bb05b62536c99c 20688 utils optional odb-api_0.18.1-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEgjg86RZbNHx4cIGiy+a7Tl2a06UFAl1sCQoACgkQy+a7Tl2a 06UYRBAAgyIfOyErsNCuQhxU6oYQexrczu/xbUnRO/K2IL6rwLQfK5zHx8EsJLSY UA7wPlDcg9D9tfKjuQU1DHPcAHg/FzqGmYA1Ol3ib5O9XfGCNGoLNpp6PRIqUeYx 1eTFcbLRgfc6Kj29PG934QiKnhon8m+rittPEs/Tis9SbaLelSy1FMcwtVWiVP2l 3oneo2Uj4N+Pc4pAJCvGr9T0v1bcN6kGeJxnOAdfR8RprdHQtakcyx4jXjhkiokW Kx0r/C0okvrxcEfBDrOwE+XariWxsT4wbE1zCb0Tfv0dX3ROkxuvga+PJv5oWe1+ CBHkBfVuhY547w4JuqRr/Y88Puu1+JynULHJLhGY1qP2Hhz44+twQbRFBTivJRfv 4s0LRZJhhxRCDDckipZijKaKL/vE/75IRkiEAUiYJDlC8EuayASPAtYy+o97Gbme GSBLpeyHJbNryehZT3K6kxZxDd70U4waWGUfAKyNiLs5PkjPsmz5qrQEnq93XTAH 1tG9ongqBrIRUpf0JNHLDhJgG/tGqwhUKe/XqnbatCgQ3QOwpHAHyvVRoNtN6zXU BksP6hwC7gJg/02ucVgAnt6yVC1O/4gkTHk5QkXeO8R2CoNntcCKkWpXweZ6TImn wBolmw0kCWAkfO3TBSnNybp35m7DJ4JSIlMigNPvPuU7UHbfyV4= =SAKZ -----END PGP SIGNATURE-----
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