Your message dated Mon, 02 Sep 2019 08:48:33 +0000
with message-id <[email protected]>
and subject line Bug#933783: fixed in virulencefinder
2.0.3+git20190809.dde157a-1
has caused the Debian Bug report #933783,
regarding virulencefinder: please make the build reproducible
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
933783: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=933783
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: virulencefinder
Version: 0.0+git20190402.4812325-1
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: timestamps
X-Debbugs-Cc: [email protected]
Hi,
Whilst working on the Reproducible Builds effort [0] we noticed
that virulencefinder could not be built reproducibly.
This is because it embedded the build time into a .json file in
the package. Patch attached that sets this recorded time to the
value exported in the SOURCE_DATE_EPOCH[1] environment variable
if it exists.
[0] https://reproducible-builds.org/
[1] https://reproducible-builds.org/specs/source-date-epoch/
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
--- a/debian/patches/reproducible_build.patch 1970-01-01 01:00:00.000000000
+0100
--- b/debian/patches/reproducible_build.patch 2019-08-03 14:36:57.318059723
+0100
@@ -0,0 +1,17 @@
+Description: Make the build reproducible
+Author: Chris Lamb <[email protected]>
+Last-Update: 2019-08-03
+
+--- virulencefinder-0.0+git20190402.4812325.orig/virulencefinder.py
++++ virulencefinder-0.0+git20190402.4812325/virulencefinder.py
+@@ -473,8 +473,8 @@ for db in results:
+
+ # Get run info for JSON file
+ service = os.path.basename(__file__).replace(".py", "")
+-date = time.strftime("%d.%m.%Y")
+-time = time.strftime("%H:%M:%S")
++date = time.strftime("%d.%m.%Y",
time.gmtime(int(os.environ.get('SOURCE_DATE_EPOCH', time.time()))))
++time = time.strftime("%H:%M:%S",
time.gmtime(int(os.environ.get('SOURCE_DATE_EPOCH', time.time()))))
+
+ # Make JSON output file
+ data = {service: {}}
--- a/debian/patches/series 1970-01-01 01:00:00.000000000 +0100
--- b/debian/patches/series 2019-08-03 14:36:56.134042719 +0100
@@ -0,0 +1 @@
+reproducible_build.patch
--- End Message ---
--- Begin Message ---
Source: virulencefinder
Source-Version: 2.0.3+git20190809.dde157a-1
We believe that the bug you reported is fixed in the latest version of
virulencefinder, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated virulencefinder package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 02 Sep 2019 09:54:48 +0200
Source: virulencefinder
Binary: virulencefinder virulencefinder-examples
Architecture: source
Version: 2.0.3+git20190809.dde157a-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
virulencefinder - identify virulence genes in total or partial sequenced
isolates o
virulencefinder-examples - example data for virulencefinder
Closes: 933783
Changes:
virulencefinder (2.0.3+git20190809.dde157a-1) unstable; urgency=medium
.
[ Chris Lamb ]
* Make the build reproducible
Closes: #933783
.
[ Andreas Tille ]
* New upstream version
* debhelper-compat 12
* Standards-Version: 4.4.0
* Upstream is now tagging releases but currently provided Git commit is
younger. Just change watch file to pick only releases in the future.
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