Your message dated Fri, 06 Sep 2019 04:07:05 +0000
with message-id <[email protected]>
and subject line Bug#933527: fixed in snakemake 5.5.4-1
has caused the Debian Bug report #933527,
regarding snakemake: fails to install: SyntaxError: duplicate argument
'stay_on_remote' in function definition
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
933527: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=933527
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: snakemake
Version: 5.5.3-1
Severity: serious
User: [email protected]
Usertags: piuparts
Hi,
during a test with piuparts I noticed your package failed to install. As
per definition of the release team this makes the package too buggy for
a release, thus the severity.
>From the attached log (scroll to the bottom...):
Setting up snakemake (5.5.3-1) ...
File "/usr/lib/python3/dist-packages/snakemake/remote/gfal.py", line 29
def __init__(self, *args, keep_local=False, stay_on_remote=False,
is_default=False, stay_on_remote=False, retry=5, **kwargs):
^
SyntaxError: duplicate argument 'stay_on_remote' in function definition
dpkg: error processing package snakemake (--configure):
installed snakemake package post-installation script subprocess returned
error exit status 1
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Errors were encountered while processing:
snakemake
cheers,
Andreas
snakemake_5.5.3-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: snakemake
Source-Version: 5.5.4-1
We believe that the bug you reported is fixed in the latest version of
snakemake, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <[email protected]> (supplier of updated snakemake
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 31 Jul 2019 11:24:24 +0200
Source: snakemake
Architecture: source
Version: 5.5.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Closes: 932116 933527
Changes:
snakemake (5.5.4-1) unstable; urgency=medium
.
[ Dylan Aïssi ]
* Apply patch from Chris Lamb to make the build reproducible
(Closes: #932116).
.
[ Michael R. Crusoe ]
* New upstream release
* debian/control: Add missing build-deps (as shown in errors during the
documentation building)
* debian/README.source: Document missing (optional?) dependencies
* debian/rules: Fix test invocation, as almost all tests were missed;
Document what is known about the skipped tests
* Apply patch from upstream to fix duplicated argument (Closes: #933527)
.
[ Andreas Tille ]
* debhelper-compat 12
* Standards-Version: 4.4.0
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
* Remove obsolete fields Name, Contact from debian/upstream/metadata.
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