Your message dated Fri, 13 Sep 2019 10:21:09 +0000
with message-id <[email protected]>
and subject line Bug#912538: fixed in libjaba-client-java 0+dfsg-2
has caused the Debian Bug report #912538,
regarding libjaba-client-java: FTBFS with Java 11 due to JAXB removal
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
912538: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=912538
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: libjaba-client-java
Version: 0+dfsg-1
Severity: serious
Tags: ftbfs buster sid
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libjaba-client-java.html
...
debian/rules override_jh_build
make[1]: Entering directory '/build/1st/libjaba-client-java-0+dfsg'
mkdir -p src;
cp -af compbio src/
jh_build
find src -name *.java -and -type f -print0 | xargs -s 512000 -0
/usr/lib/jvm/default-java/bin/javac -g -cp
/usr/share/java/log4j-1.2.jar:debian/_jh_build.min-jaba-client -d
debian/_jh_build.min-jaba-client -source 1.7 -target 1.7 -encoding ISO8859-1
warning: [options] bootstrap class path not set in conjunction with -source 7
src/compbio/metadata/JobSubmissionException.java:21: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/metadata/JobSubmissionException.java:22: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/metadata/JobSubmissionException.java:33: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/metadata/Limit.java:23: error: package javax.xml.bind.annotation
does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/metadata/Limit.java:24: error: package javax.xml.bind.annotation
does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/metadata/Limit.java:25: error: package javax.xml.bind.annotation
does not exist
import javax.xml.bind.annotation.XmlAttribute;
^
src/compbio/metadata/Limit.java:45: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/data/sequence/FastaSequence.java:20: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/data/sequence/FastaSequence.java:21: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/data/sequence/FastaSequence.java:38: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/metadata/UnsupportedRuntimeException.java:21: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/metadata/UnsupportedRuntimeException.java:22: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/metadata/UnsupportedRuntimeException.java:33: error: cannot find
symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/metadata/LimitsManager.java:23: error: package javax.xml.bind does
not exist
import javax.xml.bind.ValidationException;
^
src/compbio/metadata/LimitsManager.java:24: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/metadata/LimitsManager.java:25: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/metadata/LimitsManager.java:26: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlRootElement;
^
src/compbio/metadata/LimitsManager.java:40: error: cannot find symbol
@XmlRootElement(name = "limits")
^
symbol: class XmlRootElement
src/compbio/metadata/LimitsManager.java:41: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/metadata/PresetManager.java:23: error: package javax.xml.bind does
not exist
import javax.xml.bind.ValidationException;
^
src/compbio/metadata/PresetManager.java:24: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/metadata/PresetManager.java:25: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/metadata/PresetManager.java:26: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlElement;
^
src/compbio/metadata/PresetManager.java:27: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlRootElement;
^
src/compbio/metadata/PresetManager.java:40: error: cannot find symbol
@XmlRootElement(name = "presets")
^
symbol: class XmlRootElement
src/compbio/metadata/PresetManager.java:41: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/metadata/LimitsManager.java:116: error: cannot find symbol
public void validate(PresetManager<T> presets) throws
ValidationException {
^
symbol: class ValidationException
location: class LimitsManager<T>
where T is a type-variable:
T extends Object declared in class LimitsManager
src/compbio/metadata/Preset.java:24: error: package javax.xml.bind.annotation
does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/metadata/Preset.java:25: error: package javax.xml.bind.annotation
does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/metadata/Preset.java:26: error: package javax.xml.bind.annotation
does not exist
import javax.xml.bind.annotation.XmlElement;
^
src/compbio/metadata/Preset.java:27: error: package javax.xml.bind.annotation
does not exist
import javax.xml.bind.annotation.XmlElementWrapper;
^
src/compbio/metadata/Preset.java:28: error: package javax.xml.bind.annotation
does not exist
import javax.xml.bind.annotation.XmlTransient;
^
src/compbio/metadata/Preset.java:44: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/metadata/RunnerConfig.java:25: error: package javax.xml.bind does
not exist
import javax.xml.bind.ValidationException;
^
src/compbio/metadata/RunnerConfig.java:26: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlElement;
^
src/compbio/metadata/RunnerConfig.java:27: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlRootElement;
^
src/compbio/metadata/RunnerConfig.java:28: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlTransient;
^
src/compbio/metadata/RunnerConfig.java:42: error: cannot find symbol
@XmlRootElement
^
symbol: class XmlRootElement
src/compbio/metadata/PresetManager.java:122: error: cannot find symbol
public void validate(RunnerConfig<T> options) throws
ValidationException {
^
symbol: class ValidationException
location: class PresetManager<T>
where T is a type-variable:
T extends Object declared in class PresetManager
src/compbio/metadata/PresetManager.java:151: error: cannot find symbol
throws ValidationException {
^
symbol: class ValidationException
location: class PresetManager<T>
where T is a type-variable:
T extends Object declared in class PresetManager
src/compbio/metadata/Option.java:28: error: package javax.xml.bind does not
exist
import javax.xml.bind.ValidationException;
^
src/compbio/metadata/Option.java:29: error: package javax.xml.bind.annotation
does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/metadata/Option.java:30: error: package javax.xml.bind.annotation
does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/metadata/Option.java:31: error: package javax.xml.bind.annotation
does not exist
import javax.xml.bind.annotation.XmlAttribute;
^
src/compbio/metadata/Option.java:32: error: package javax.xml.bind.annotation
does not exist
import javax.xml.bind.annotation.XmlElement;
^
src/compbio/metadata/Option.java:47: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/metadata/Option.java:311: error: cannot find symbol
void validate() throws ValidationException {
^
symbol: class ValidationException
location: class Option<T>
where T is a type-variable:
T extends Object declared in class Option
src/compbio/metadata/Parameter.java:28: error: package javax.xml.bind does not
exist
import javax.xml.bind.ValidationException;
^
src/compbio/metadata/Parameter.java:29: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/metadata/Parameter.java:30: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/metadata/Parameter.java:31: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlElement;
^
src/compbio/metadata/Parameter.java:48: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/metadata/RunnerConfig.java:382: error: cannot find symbol
public void validate() throws ValidationException {
^
symbol: class ValidationException
location: class RunnerConfig<T>
where T is a type-variable:
T extends Object declared in class RunnerConfig
src/compbio/metadata/ValueConstrain.java:21: error: package javax.xml.bind does
not exist
import javax.xml.bind.ValidationException;
^
src/compbio/metadata/ValueConstrain.java:22: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/metadata/ValueConstrain.java:23: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/metadata/ValueConstrain.java:24: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlElement;
^
src/compbio/metadata/ValueConstrain.java:35: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/metadata/Parameter.java:198: error: cannot find symbol
void validate() throws ValidationException {
^
symbol: class ValidationException
location: class Parameter<T>
where T is a type-variable:
T extends Object declared in class Parameter
src/compbio/metadata/ValueConstrain.java:202: error: cannot find symbol
void validate() throws ValidationException {
^
symbol: class ValidationException
location: class ValueConstrain
src/compbio/metadata/LimitExceededException.java:23: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/metadata/LimitExceededException.java:24: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/metadata/LimitExceededException.java:38: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/metadata/ChunkHolder.java:21: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/metadata/ChunkHolder.java:22: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/metadata/ChunkHolder.java:32: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/ws/client/Jws2Client.java:39: error: package javax.xml.ws does not
exist
import javax.xml.ws.Service;
^
src/compbio/ws/client/Jws2Client.java:40: error: package javax.xml.ws does not
exist
import javax.xml.ws.WebServiceException;
^
src/compbio/data/msa/MsaWS.java:24: error: package javax.jws does not exist
import javax.jws.WebParam;
^
src/compbio/data/msa/MsaWS.java:25: error: package javax.jws does not exist
import javax.jws.WebService;
^
src/compbio/data/msa/MsaWS.java:53: error: cannot find symbol
@WebService(targetNamespace = "http://msa.data.compbio/01/01/2010/";)
^
symbol: class WebService
src/compbio/data/sequence/Alignment.java:23: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/data/sequence/Alignment.java:24: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/data/sequence/Alignment.java:43: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/ws/client/Jws2Client.java:481: error: cannot find symbol
throws WebServiceException {
^
symbol: class WebServiceException
location: class Jws2Client
src/compbio/data/sequence/AlignmentMetadata.java:21: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessType;
^
src/compbio/data/sequence/AlignmentMetadata.java:22: error: package
javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAccessorType;
^
src/compbio/data/sequence/AlignmentMetadata.java:35: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: class XmlAccessorType
src/compbio/ws/client/WSTester.java:27: error: package javax.xml.ws does not
exist
import javax.xml.ws.WebServiceException;
^
src/compbio/metadata/JobSubmissionException.java:33: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: variable XmlAccessType
src/compbio/metadata/Limit.java:45: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: variable XmlAccessType
src/compbio/metadata/Limit.java:55: error: cannot find symbol
@XmlAttribute
^
symbol: class XmlAttribute
location: class Limit<T>
where T is a type-variable:
T extends Object declared in class Limit
src/compbio/data/sequence/FastaSequence.java:38: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: variable XmlAccessType
src/compbio/metadata/UnsupportedRuntimeException.java:33: error: cannot find
symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: variable XmlAccessType
src/compbio/metadata/LimitsManager.java:41: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: variable XmlAccessType
src/compbio/metadata/PresetManager.java:41: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: variable XmlAccessType
src/compbio/metadata/PresetManager.java:44: error: cannot find symbol
@XmlElement(required = true)
^
symbol: class XmlElement
location: class PresetManager<T>
where T is a type-variable:
T extends Object declared in class PresetManager
src/compbio/metadata/Preset.java:44: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: variable XmlAccessType
src/compbio/metadata/PresetManager.java:47: error: cannot find symbol
@XmlElement(required = true)
^
symbol: class XmlElement
location: class PresetManager<T>
where T is a type-variable:
T extends Object declared in class PresetManager
src/compbio/metadata/Option.java:47: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: variable XmlAccessType
src/compbio/metadata/Option.java:50: error: cannot find symbol
@XmlElement(required = true)
^
symbol: class XmlElement
location: class Option<T>
where T is a type-variable:
T extends Object declared in class Option
src/compbio/metadata/Option.java:53: error: cannot find symbol
@XmlElement(required = true)
^
symbol: class XmlElement
location: class Option<T>
where T is a type-variable:
T extends Object declared in class Option
src/compbio/metadata/Option.java:56: error: cannot find symbol
@XmlElement(required = true)
^
symbol: class XmlElement
location: class Option<T>
where T is a type-variable:
T extends Object declared in class Option
src/compbio/metadata/Option.java:59: error: cannot find symbol
@XmlAttribute
^
symbol: class XmlAttribute
location: class Option<T>
where T is a type-variable:
T extends Object declared in class Option
src/compbio/metadata/Option.java:61: error: cannot find symbol
@XmlElement
^
symbol: class XmlElement
location: class Option<T>
where T is a type-variable:
T extends Object declared in class Option
src/compbio/metadata/Option.java:63: error: cannot find symbol
@XmlElement
^
symbol: class XmlElement
location: class Option<T>
where T is a type-variable:
T extends Object declared in class Option
src/compbio/metadata/Parameter.java:48: error: cannot find symbol
@XmlAccessorType(XmlAccessType.FIELD)
^
symbol: variable XmlAccessType
src/compbio/metadata/RunnerConfig.java:58: error: cannot find symbol
@XmlTransient
^
symbol: class XmlTransient
location: class RunnerConfig<T>
where T is a type-variable:
T extends Object declared in class RunnerConfig
src/compbio/metadata/RunnerConfig.java:114: error: cannot find symbol
@XmlTransient
^
symbol: class XmlTransient
location: class RunnerConfig<T>
where T is a type-variable:
T extends Object declared in class RunnerConfig
src/compbio/metadata/RunnerConfig.java:154: error: cannot find symbol
@XmlElement(required = true)
^
symbol: class XmlElement
location: class RunnerConfig<T>
where T is a type-variable:
T extends Object declared in class RunnerConfig
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
100 errors
1 warning
make[1]: *** [debian/rules:17: override_jh_build] Error 123
--- End Message ---
--- Begin Message ---
Source: libjaba-client-java
Source-Version: 0+dfsg-2
We believe that the bug you reported is fixed in the latest version of
libjaba-client-java, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Emmanuel Bourg <[email protected]> (supplier of updated libjaba-client-java
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 13 Sep 2019 11:38:27 +0200
Source: libjaba-client-java
Architecture: source
Version: 0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Vincent Fourmond <[email protected]>
Changed-By: Emmanuel Bourg <[email protected]>
Closes: 912538
Changes:
libjaba-client-java (0+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Fixed the build failure with Java 11 (Closes: #912538)
* Standards-Version updated to 4.4.0
* Switch to debhelper level 11
* Migrate the package to Git
* Updated debian/copyright
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